snakemake¶
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
https://snakemake.readthedocs.io
Available modules¶
The overview below shows which snakemake installations are available per target architecture in EESSI, ordered based on software version (new to old).
To start using snakemake, load one of these modules using a module load command like:
(This data was automatically generated on Tue, 10 Dec 2024 at 01:48:14 UTC)
| aarch64/generic | aarch64/neoverse_n1 | aarch64/neoverse_v1 | x86_64/generic | x86_64/amd/zen2 | x86_64/amd/zen3 | x86_64/amd/zen4 | x86_64/intel/haswell | x86_64/intel/skylake_avx512 | |
|---|---|---|---|---|---|---|---|---|---|
| snakemake/8.4.2-foss-2023a | x | x | x | x | x | x | x | x | x |
snakemake/8.4.2-foss-2023a¶
This is a list of extensions included in the module:
argparse-dataclass-2.0.0, conda-inject-1.3.1, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.19.1, humanfriendly-10.0, immutables-0.20, jupyter-core-5.7.1, nbformat-5.9.2, plac-1.4.2, reretry-0.11.8, smart-open-6.4.0, snakemake-8.4.2, snakemake-executor-plugin-cluster-generic-1.0.7, snakemake-executor-plugin-cluster-sync-0.1.3, snakemake-executor-plugin-flux-0.1.0, snakemake-executor-plugin-slurm-0.2.1, snakemake-executor-plugin-slurm-jobstep-0.1.10, snakemake-interface-common-1.15.2, snakemake-interface-executor-plugins-8.2.0, snakemake-interface-storage-plugins-3.0.0, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.4