snakemake
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
homepage: https://snakemake.readthedocs.io
Available installations
| snakemake version |
Supported CPU targets |
Supported GPU targets |
EESSI version |
Module |
| 8.28.0 |
generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
|
(none) |
2023.06 |
snakemake/8.28.0-foss-2023b |
| 8.4.2 |
generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
|
(none) |
2023.06 |
snakemake/8.4.2-foss-2023a |
Extensions
Overview of extensions included in snakemake installations
argparse-dataclass
argparse-dataclass version |
snakemake modules that include it |
| 2.0.0 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
conda-inject
conda-inject version |
snakemake modules that include it |
| 1.3.1 |
snakemake/8.4.2-foss-2023a |
| 1.3.2 |
snakemake/8.28.0-foss-2023b |
ConfigArgParse
ConfigArgParse version |
snakemake modules that include it |
| 1.7 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
connection-pool
connection-pool version |
snakemake modules that include it |
| 0.0.3 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
datrie
datrie version |
snakemake modules that include it |
| 0.8.2 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
dpath
dpath version |
snakemake modules that include it |
| 2.1.6 |
snakemake/8.4.2-foss-2023a |
| 2.2.0 |
snakemake/8.28.0-foss-2023b |
fastjsonschema
fastjsonschema version |
snakemake modules that include it |
| 2.19.1 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
humanfriendly
humanfriendly version |
snakemake modules that include it |
| 10.0 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
immutables
immutables version |
snakemake modules that include it |
| 0.20 |
snakemake/8.4.2-foss-2023a |
| 0.21 |
snakemake/8.28.0-foss-2023b |
jupyter-core
jupyter-core version |
snakemake modules that include it |
| 5.7.1 |
snakemake/8.4.2-foss-2023a |
| 5.7.2 |
snakemake/8.28.0-foss-2023b |
nbformat version |
snakemake modules that include it |
| 5.10.4 |
snakemake/8.28.0-foss-2023b |
| 5.9.2 |
snakemake/8.4.2-foss-2023a |
plac
plac version |
snakemake modules that include it |
| 1.4.2 |
snakemake/8.4.2-foss-2023a |
| 1.4.3 |
snakemake/8.28.0-foss-2023b |
reretry
reretry version |
snakemake modules that include it |
| 0.11.8 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
smart-open
smart-open version |
snakemake modules that include it |
| 6.4.0 |
snakemake/8.4.2-foss-2023a |
| 7.1.0 |
snakemake/8.28.0-foss-2023b |
snakemake
snakemake version |
snakemake modules that include it |
| 8.28.0 |
snakemake/8.28.0-foss-2023b |
| 8.4.2 |
snakemake/8.4.2-foss-2023a |
snakemake-executor-plugin-cluster-generic
snakemake-executor-plugin-cluster-generic version |
snakemake modules that include it |
| 1.0.7 |
snakemake/8.4.2-foss-2023a |
| 1.0.9 |
snakemake/8.28.0-foss-2023b |
snakemake-executor-plugin-cluster-sync
snakemake-executor-plugin-cluster-sync version |
snakemake modules that include it |
| 0.1.3 |
snakemake/8.4.2-foss-2023a |
| 0.1.4 |
snakemake/8.28.0-foss-2023b |
snakemake-executor-plugin-flux
snakemake-executor-plugin-flux version |
snakemake modules that include it |
| 0.1.0 |
snakemake/8.4.2-foss-2023a |
| 0.1.1 |
snakemake/8.28.0-foss-2023b |
snakemake-executor-plugin-slurm
snakemake-executor-plugin-slurm version |
snakemake modules that include it |
| 0.12.0 |
snakemake/8.28.0-foss-2023b |
| 0.2.1 |
snakemake/8.4.2-foss-2023a |
snakemake-executor-plugin-slurm-jobstep
snakemake-executor-plugin-slurm-jobstep version |
snakemake modules that include it |
| 0.1.10 |
snakemake/8.4.2-foss-2023a |
| 0.2.1 |
snakemake/8.28.0-foss-2023b |
snakemake-interface-common
snakemake-interface-common version |
snakemake modules that include it |
| 1.15.2 |
snakemake/8.4.2-foss-2023a |
| 1.17.4 |
snakemake/8.28.0-foss-2023b |
snakemake-interface-executor-plugins
snakemake-interface-executor-plugins version |
snakemake modules that include it |
| 8.2.0 |
snakemake/8.4.2-foss-2023a |
| 9.3.3 |
snakemake/8.28.0-foss-2023b |
snakemake-interface-report-plugins
snakemake-interface-report-plugins version |
snakemake modules that include it |
| 1.1.0 |
snakemake/8.28.0-foss-2023b |
snakemake-interface-storage-plugins
snakemake-interface-storage-plugins version |
snakemake modules that include it |
| 3.0.0 |
snakemake/8.4.2-foss-2023a |
| 3.3.0 |
snakemake/8.28.0-foss-2023b |
stopit
stopit version |
snakemake modules that include it |
| 1.1.2 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
throttler
throttler version |
snakemake modules that include it |
| 1.2.2 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
toposort
toposort version |
snakemake modules that include it |
| 1.10 |
snakemake/8.4.2-foss-2023a
snakemake/8.28.0-foss-2023b |
wrapt
wrapt version |
snakemake modules that include it |
| 1.16.0 |
snakemake/8.28.0-foss-2023b |
yte
yte version |
snakemake modules that include it |
| 1.5.4 |
snakemake/8.4.2-foss-2023a |
| 1.5.5 |
snakemake/8.28.0-foss-2023b |