snakemake¶

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

homepage: https://snakemake.readthedocs.io

Available installations¶

snakemake version	Supported CPU targets	Supported GPU targets	EESSI version	Module
9.22.0	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4`, `zen5` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2025.06	`snakemake/9.22.0-foss-2025b`
8.28.0	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`snakemake/8.28.0-foss-2023b`
8.4.2	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`snakemake/8.4.2-foss-2023a`

Extensions¶

Overview of extensions included in snakemake installations

argparse-dataclass¶

`argparse-dataclass` version	snakemake modules that include it
2.0.0	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

conda-inject¶

`conda-inject` version	snakemake modules that include it
1.3.2	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b`
1.3.1	`snakemake/8.4.2-foss-2023a`

ConfigArgParse¶

`ConfigArgParse` version	snakemake modules that include it
1.7	`snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

configargparse¶

`configargparse` version	snakemake modules that include it
1.7.5	`snakemake/9.22.0-foss-2025b`

connection-pool¶

`connection-pool` version	snakemake modules that include it
0.0.3	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

datrie¶

`datrie` version	snakemake modules that include it
0.8.3	`snakemake/9.22.0-foss-2025b`
0.8.2	`snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

dpath¶

`dpath` version	snakemake modules that include it
2.2.0	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b`
2.1.6	`snakemake/8.4.2-foss-2023a`

fastjsonschema¶

`fastjsonschema` version	snakemake modules that include it
2.21.2	`snakemake/9.22.0-foss-2025b`
2.19.1	`snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

humanfriendly¶

`humanfriendly` version	snakemake modules that include it
10.0	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

immutables¶

`immutables` version	snakemake modules that include it
0.21	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b`
0.20	`snakemake/8.4.2-foss-2023a`

jupyter-core¶

`jupyter-core` version	snakemake modules that include it
5.9.1	`snakemake/9.22.0-foss-2025b`
5.7.2	`snakemake/8.28.0-foss-2023b`
5.7.1	`snakemake/8.4.2-foss-2023a`

nbformat¶

`nbformat` version	snakemake modules that include it
5.10.4	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b`
5.9.2	`snakemake/8.4.2-foss-2023a`

plac¶

`plac` version	snakemake modules that include it
1.4.5	`snakemake/9.22.0-foss-2025b`
1.4.3	`snakemake/8.28.0-foss-2023b`
1.4.2	`snakemake/8.4.2-foss-2023a`

reretry¶

`reretry` version	snakemake modules that include it
0.11.8	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

smart-open¶

`smart-open` version	snakemake modules that include it
7.6.1	`snakemake/9.22.0-foss-2025b`
7.1.0	`snakemake/8.28.0-foss-2023b`
6.4.0	`snakemake/8.4.2-foss-2023a`

snakemake¶

`snakemake` version	snakemake modules that include it
9.22.0	`snakemake/9.22.0-foss-2025b`
8.28.0	`snakemake/8.28.0-foss-2023b`
8.4.2	`snakemake/8.4.2-foss-2023a`

snakemake-executor-plugin-cluster-generic¶

`snakemake-executor-plugin-cluster-generic` version	snakemake modules that include it
1.0.9	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b`
1.0.7	`snakemake/8.4.2-foss-2023a`

snakemake-executor-plugin-cluster-sync¶

`snakemake-executor-plugin-cluster-sync` version	snakemake modules that include it
0.1.5	`snakemake/9.22.0-foss-2025b`
0.1.4	`snakemake/8.28.0-foss-2023b`
0.1.3	`snakemake/8.4.2-foss-2023a`

snakemake-executor-plugin-flux¶

`snakemake-executor-plugin-flux` version	snakemake modules that include it
0.1.1	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b`
0.1.0	`snakemake/8.4.2-foss-2023a`

snakemake-executor-plugin-slurm¶

`snakemake-executor-plugin-slurm` version	snakemake modules that include it
2.6.1	`snakemake/9.22.0-foss-2025b`
0.12.0	`snakemake/8.28.0-foss-2023b`
0.2.1	`snakemake/8.4.2-foss-2023a`

snakemake-executor-plugin-slurm-jobstep¶

`snakemake-executor-plugin-slurm-jobstep` version	snakemake modules that include it
0.6.1	`snakemake/9.22.0-foss-2025b`
0.2.1	`snakemake/8.28.0-foss-2023b`
0.1.10	`snakemake/8.4.2-foss-2023a`

snakemake-interface-common¶

`snakemake-interface-common` version	snakemake modules that include it
1.23.0	`snakemake/9.22.0-foss-2025b`
1.17.4	`snakemake/8.28.0-foss-2023b`
1.15.2	`snakemake/8.4.2-foss-2023a`

snakemake-interface-executor-plugins¶

`snakemake-interface-executor-plugins` version	snakemake modules that include it
9.4.0	`snakemake/9.22.0-foss-2025b`
9.3.3	`snakemake/8.28.0-foss-2023b`
8.2.0	`snakemake/8.4.2-foss-2023a`

snakemake-interface-logger-plugins¶

`snakemake-interface-logger-plugins` version	snakemake modules that include it
2.1.0	`snakemake/9.22.0-foss-2025b`

snakemake-interface-report-plugins¶

`snakemake-interface-report-plugins` version	snakemake modules that include it
1.3.0	`snakemake/9.22.0-foss-2025b`
1.1.0	`snakemake/8.28.0-foss-2023b`

snakemake-interface-scheduler-plugins¶

`snakemake-interface-scheduler-plugins` version	snakemake modules that include it
2.0.2	`snakemake/9.22.0-foss-2025b`

snakemake-interface-storage-plugins¶

`snakemake-interface-storage-plugins` version	snakemake modules that include it
4.4.1	`snakemake/9.22.0-foss-2025b`
3.3.0	`snakemake/8.28.0-foss-2023b`
3.0.0	`snakemake/8.4.2-foss-2023a`

sqlmodel¶

`sqlmodel` version	snakemake modules that include it
0.0.37	`snakemake/9.22.0-foss-2025b`

stopit¶

`stopit` version	snakemake modules that include it
1.1.2	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

tenacity¶

`tenacity` version	snakemake modules that include it
9.1.4	`snakemake/9.22.0-foss-2025b`

throttler¶

`throttler` version	snakemake modules that include it
1.2.3	`snakemake/9.22.0-foss-2025b`
1.2.2	`snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

toposort¶

`toposort` version	snakemake modules that include it
1.10	`snakemake/9.22.0-foss-2025b` `snakemake/8.28.0-foss-2023b` `snakemake/8.4.2-foss-2023a`

wrapt¶

`wrapt` version	snakemake modules that include it
1.16.0	`snakemake/8.28.0-foss-2023b`

yte¶

`yte` version	snakemake modules that include it
1.8.1	`snakemake/9.22.0-foss-2025b`
1.5.5	`snakemake/8.28.0-foss-2023b`
1.5.4	`snakemake/8.4.2-foss-2023a`