scikit-bio¶

scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and educational resources for bioinformatics.

Available installations¶

scikit-bio version	Supported CPU targets	Supported GPU targets	EESSI version	Module
0.7.2	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2025.06	`scikit-bio/0.7.2-foss-2025b`
0.7.1.post1	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2025.06	`scikit-bio/0.7.1.post1-foss-2025a`
0.6.0	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`scikit-bio/0.6.0-foss-2023a`

Overview of extensions included in scikit-bio installations

`array_api_compat` version	scikit-bio modules that include it
1.13.0	`scikit-bio/0.7.2-foss-2025b` `scikit-bio/0.7.1.post1-foss-2025a`

`hdmedians` version	scikit-bio modules that include it
0.14.2	`scikit-bio/0.6.0-foss-2023a`

`natsort` version	scikit-bio modules that include it
8.4.0	`scikit-bio/0.7.2-foss-2025b` `scikit-bio/0.7.1.post1-foss-2025a` `scikit-bio/0.6.0-foss-2023a`

`packaging` version	scikit-bio modules that include it
25.0	`scikit-bio/0.7.1.post1-foss-2025a`

`scikit-bio` version	scikit-bio modules that include it
0.7.2	`scikit-bio/0.7.2-foss-2025b`
0.7.1.post1	`scikit-bio/0.7.1.post1-foss-2025a`
0.6.0	`scikit-bio/0.6.0-foss-2023a`