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scCODA

scCODA allows for identification of compositional changes in high-throughput sequencing count data, especially cell compositions from scRNA-seq.

homepage: https://github.com/theislab/scCODA

Available installations

scCODA version Supported CPU targets Supported GPU targets EESSI version Module
0.1.9 generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
 (none) 2023.06 scCODA/0.1.9-foss-2023a

Extensions

Overview of extensions included in scCODA installations

scCODA

scCODA version scCODA modules that include it
0.1.9 scCODA/0.1.9-foss-2023a