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pyfaidx

pyfaidx: efficient pythonic random access to fasta subsequences

homepage: https://pypi.python.org/pypi/pyfaidx

Available installations

pyfaidx version Supported CPU targets Supported GPU targets EESSI version Module
0.7.2.1 generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
 (none) 2023.06 pyfaidx/0.7.2.1-GCCcore-12.2.0
0.8.1.1 generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
 (none) 2023.06 pyfaidx/0.8.1.1-GCCcore-12.3.0
0.8.1.1 generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
 (none) 2023.06 pyfaidx/0.8.1.1-GCCcore-13.2.0

Extensions

Overview of extensions included in pyfaidx installations

importlib_metadata

importlib_metadata version pyfaidx modules that include it
7.0.1 pyfaidx/0.8.1.1-GCCcore-12.3.0

pyfaidx

pyfaidx version pyfaidx modules that include it
0.8.1.1 pyfaidx/0.8.1.1-GCCcore-12.3.0

zipp

zipp version pyfaidx modules that include it
3.17.0 pyfaidx/0.8.1.1-GCCcore-12.3.0