Skip to content

pyMBE

pyMBE: the Python-based Molecule Builder for ESPResSo

pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo.

homepage:

Available installations

pyMBE version Supported CPU targets Supported GPU targets EESSI version Module
0.8.0 generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
(none) 2023.06 pyMBE/0.8.0-foss-2023b

Extensions

Overview of extensions included in pyMBE installations

biopandas

biopandas version pyMBE modules that include it
0.5.1.dev0 pyMBE/0.8.0-foss-2023b

looseversion

looseversion version pyMBE modules that include it
1.1.2 pyMBE/0.8.0-foss-2023b

mmtf-python

mmtf-python version pyMBE modules that include it
1.1.3 pyMBE/0.8.0-foss-2023b

Pint-Pandas

Pint-Pandas version pyMBE modules that include it
0.5 pyMBE/0.8.0-foss-2023b

pyMBE

pyMBE version pyMBE modules that include it
0.8.0 pyMBE/0.8.0-foss-2023b