deepTools¶
deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.
homepage: https://deeptools.readthedocs.io/
Available installations¶
| deepTools version | Supported CPU targets | Supported GPU targets | EESSI version | Module |
|---|---|---|---|---|
| 3.5.5 | generic: aarch64, x86_64Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/graceAMD: zen2, zen3, zen4, zen5Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake |
(none) | 2025.06 | deepTools/3.5.5-gfbf-2024a |
Extensions¶
Overview of extensions included in deepTools installations
deepTools¶
deepTools version |
deepTools modules that include it |
|---|---|
| 3.5.5 | deepTools/3.5.5-gfbf-2024a |
deeptoolsintervals¶
deeptoolsintervals version |
deepTools modules that include it |
|---|---|
| 0.1.9 | deepTools/3.5.5-gfbf-2024a |
numpydoc¶
numpydoc version |
deepTools modules that include it |
|---|---|
| 1.5.0 | deepTools/3.5.5-gfbf-2024a |
py2bit¶
py2bit version |
deepTools modules that include it |
|---|---|
| 0.3.0 | deepTools/3.5.5-gfbf-2024a |