cutadapt¶
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
https://opensource.scilifelab.se/projects/cutadapt/
Available modules¶
The overview below shows which cutadapt installations are available per target architecture in EESSI, ordered based on software version (new to old).
To start using cutadapt, load one of these modules using a module load command like:
(This data was automatically generated on Fri, 06 Feb 2026 at 13:12:13 UTC)
| aarch64/generic | aarch64/a64fx | aarch64/neoverse_n1 | aarch64/neoverse_v1 | aarch64/nvidia/grace | x86_64/generic | x86_64/amd/zen2 | x86_64/amd/zen3 | x86_64/amd/zen4 | x86_64/intel/cascadelake | x86_64/intel/haswell | x86_64/intel/icelake | x86_64/intel/sapphirerapids | x86_64/intel/skylake_avx512 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cutadapt/5.0-GCCcore-13.2.0 | x | x | x | x | x | x | x | x | x | x | x | x | x | x |
cutadapt/5.0-GCCcore-13.2.0¶
This is a list of extensions included in the module:
cutadapt-5.0, dnaio-1.2.3, xopen-1.7.0