cutadapt¶
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
homepage: https://opensource.scilifelab.se/projects/cutadapt/
Available installations¶
| cutadapt version | Supported CPU targets | Supported GPU targets | EESSI version | Module |
|---|---|---|---|---|
| 5.0 | generic: aarch64, x86_64Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/graceAMD: zen2, zen3, zen4Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake |
(none) | 2023.06 | cutadapt/5.0-GCCcore-13.2.0 |
Extensions¶
Overview of extensions included in cutadapt installations
cutadapt¶
cutadapt version |
cutadapt modules that include it |
|---|---|
| 5.0 | cutadapt/5.0-GCCcore-13.2.0 |
dnaio¶
dnaio version |
cutadapt modules that include it |
|---|---|
| 1.2.3 | cutadapt/5.0-GCCcore-13.2.0 |
xopen¶
xopen version |
cutadapt modules that include it |
|---|---|
| 1.7.0 | cutadapt/5.0-GCCcore-13.2.0 |