cooler¶

Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.

homepage: https://open2c.github.io/cooler

Available installations¶

cooler version	Supported CPU targets	Supported GPU targets	EESSI version	Module
0.10.2	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`cooler/0.10.2-foss-2023b`

Extensions¶

Overview of extensions included in cooler installations

asciitree¶

`asciitree` version	cooler modules that include it
0.3.3	`cooler/0.10.2-foss-2023b`

cooler¶

`cooler` version	cooler modules that include it
0.10.2	`cooler/0.10.2-foss-2023b`

cytoolz¶

`cytoolz` version	cooler modules that include it
1.0.0	`cooler/0.10.2-foss-2023b`

toolz¶

`toolz` version	cooler modules that include it
1.0.0	`cooler/0.10.2-foss-2023b`