WhatsHap¶
WhatsHap is a software for phasing genomic variants using DNAsequencing reads, also called read-based phasing or haplotype assembly. It isespecially suitable for long reads, but works also well with short reads.
https://whatshap.readthedocs.io
Available modules¶
The overview below shows which WhatsHap installations are available per target architecture in EESSI, ordered based on software version (new to old).
To start using WhatsHap, load one of these modules using a module load command like:
(This data was automatically generated on Sat, 26 Apr 2025 at 01:46:16 UTC)
| aarch64/generic | aarch64/neoverse_n1 | aarch64/neoverse_v1 | x86_64/generic | x86_64/amd/zen2 | x86_64/amd/zen3 | x86_64/amd/zen4 | x86_64/intel/haswell | x86_64/intel/sapphirerapids | x86_64/intel/skylake_avx512 | |
|---|---|---|---|---|---|---|---|---|---|---|
| WhatsHap/2.2-foss-2023a | x | x | x | x | x | x | x | x | x | x |
| WhatsHap/2.1-foss-2022b | x | x | x | x | x | x | x | x | x | x |
WhatsHap/2.2-foss-2023a¶
This is a list of extensions included in the module:
PuLP-2.8.0, whatshap-2.2, xopen-1.7.0
WhatsHap/2.1-foss-2022b¶
This is a list of extensions included in the module:
pulp-2.8.0, WhatsHap-2.1, xopen-1.7.0