VSEARCH¶
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
homepage: https://github.com/torognes/vsearch
Available installations¶
| VSEARCH version | Supported CPU targets | Supported GPU targets | EESSI version | Module |
|---|---|---|---|---|
| 2.30.0 | generic: aarch64, x86_64Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/graceAMD: zen2, zen3, zen4Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake |
(none) | 2023.06 | VSEARCH/2.30.0-GCC-13.2.0 |