Transrate¶
Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and parameters, filter out the bad contigs from an assembly, and help decide when to stop trying to improve the assembly.
https://hibberdlab.com/transrate
Available modules¶
The overview below shows which Transrate installations are available per target architecture in EESSI, ordered based on software version (new to old).
To start using Transrate, load one of these modules using a module load command like:
(This data was automatically generated on Mon, 05 May 2025 at 12:54:56 UTC)
| aarch64/generic | aarch64/neoverse_n1 | aarch64/neoverse_v1 | x86_64/generic | x86_64/amd/zen2 | x86_64/amd/zen3 | x86_64/amd/zen4 | x86_64/intel/haswell | x86_64/intel/sapphirerapids | x86_64/intel/skylake_avx512 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Transrate/1.0.3-GCC-12.3.0 | x | x | x | x | x | x | x | x | x | x |