Tombo¶
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
homepage: https://github.com/nanoporetech/tombo
Available installations¶
| Tombo version | Supported CPU targets | Supported GPU targets | EESSI version | Module |
|---|---|---|---|---|
| 1.5.1 | generic: aarch64, x86_64Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/graceAMD: zen2, zen3, zen4Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake |
(none) | 2023.06 | Tombo/1.5.1-foss-2023a |
Extensions¶
Overview of extensions included in Tombo installations
mappy¶
mappy version |
Tombo modules that include it |
|---|---|
| 2.28 | Tombo/1.5.1-foss-2023a |
ont-tombo¶
ont-tombo version |
Tombo modules that include it |
|---|---|
| 1.5.1 | Tombo/1.5.1-foss-2023a |
pyfaidx¶
pyfaidx version |
Tombo modules that include it |
|---|---|
| 0.5.8 | Tombo/1.5.1-foss-2023a |