Pysam¶
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
homepage: https://github.com/pysam-developers/pysam
Available installations¶
| Pysam version | Supported CPU targets | Supported GPU targets | EESSI version | Module |
|---|---|---|---|---|
| 0.21.0 | generic: aarch64, x86_64Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/graceAMD: zen2, zen3, zen4Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake |
(none) | 2023.06 | Pysam/0.21.0-GCC-12.2.0 |
| 0.22.0 | generic: aarch64, x86_64Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/graceAMD: zen2, zen3, zen4Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake |
(none) | 2023.06 | Pysam/0.22.0-GCC-12.3.0 |