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MDAnalysis

MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats.

homepage: https://www.mdanalysis.org/

Available installations

MDAnalysis version Supported CPU targets Supported GPU targets EESSI version Module
2.4.2 generic: aarch64, x86_64
Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/grace
AMD: zen2, zen3, zen4
Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake
(none) 2023.06 MDAnalysis/2.4.2-foss-2022b

Extensions

Overview of extensions included in MDAnalysis installations

fasteners

fasteners version MDAnalysis modules that include it
0.18 MDAnalysis/2.4.2-foss-2022b

funcsigs

funcsigs version MDAnalysis modules that include it
1.0.2 MDAnalysis/2.4.2-foss-2022b

GridDataFormats

GridDataFormats version MDAnalysis modules that include it
1.0.1 MDAnalysis/2.4.2-foss-2022b

gsd

gsd version MDAnalysis modules that include it
2.8.0 MDAnalysis/2.4.2-foss-2022b

MDAnalysis

MDAnalysis version MDAnalysis modules that include it
2.4.2 MDAnalysis/2.4.2-foss-2022b

mmtf-python

mmtf-python version MDAnalysis modules that include it
1.1.3 MDAnalysis/2.4.2-foss-2022b

mrcfile

mrcfile version MDAnalysis modules that include it
1.4.3 MDAnalysis/2.4.2-foss-2022b

msgpack

msgpack version MDAnalysis modules that include it
1.0.5 MDAnalysis/2.4.2-foss-2022b