MAFFT¶

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.

homepage: https://mafft.cbrc.jp/alignment/software/source.html

Available installations¶

MAFFT version	Supported CPU targets	Supported GPU targets	EESSI version	Module
7.505	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`MAFFT/7.505-GCC-12.2.0-with-extensions`
7.520	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`MAFFT/7.520-GCC-12.3.0-with-extensions`

Extensions¶

Overview of extensions included in MAFFT installations

MAFFT¶

`MAFFT` version	MAFFT modules that include it
7.505	`MAFFT/7.505-GCC-12.2.0-with-extensions`
7.520	`MAFFT/7.520-GCC-12.3.0-with-extensions`

MAFFT Extensions¶

`MAFFT Extensions` version	MAFFT modules that include it
7.505	`MAFFT/7.505-GCC-12.2.0-with-extensions`
7.520	`MAFFT/7.520-GCC-12.3.0-with-extensions`