FastQC¶
FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.
homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Available installations¶
| FastQC version | Supported CPU targets | Supported GPU targets | EESSI version | Module |
|---|---|---|---|---|
| 0.12.1 | generic: aarch64, x86_64Arm: a64fx, neoverse_n1, neoverse_v1, nvidia/graceAMD: zen2, zen3, zen4Intel: haswell, skylake_avx512, sapphirerapids, icelake, cascadelake |
(none) | 2023.06 | FastQC/0.12.1-Java-11 |