Cassiopeia¶
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.
https://github.com/YosefLab/Cassiopeia
Available modules¶
The overview below shows which Cassiopeia installations are available per target architecture in EESSI, ordered based on software version (new to old).
To start using Cassiopeia, load one of these modules using a module load command like:
(This data was automatically generated on Wed, 14 May 2025 at 12:49:32 UTC)
| aarch64/generic | aarch64/neoverse_n1 | aarch64/neoverse_v1 | aarch64/nvidia/grace | x86_64/generic | x86_64/amd/zen2 | x86_64/amd/zen3 | x86_64/amd/zen4 | x86_64/intel/haswell | x86_64/intel/sapphirerapids | x86_64/intel/skylake_avx512 | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cassiopeia/2.0.0-foss-2023a | x | x | x | x | x | x | x | x | x | x | x |
Cassiopeia/2.0.0-foss-2023a¶
This is a list of extensions included in the module:
bleach-6.1.0, Cassiopeia-2.0.0, comm-0.2.2, defusedxml-0.7.1, deprecation-2.1.0, fastjsonschema-2.19.1, hits-0.4.0, ipywidgets-8.1.2, itolapi-4.1.4, jupyter_client-8.6.1, jupyter_core-5.7.2, jupyter_packaging-0.12.3, jupyterlab_pygments-0.3.0, jupyterlab_widgets-3.0.10, Levenshtein-0.22.0, mistune-3.0.2, nbclient-0.10.0, nbconvert-7.16.3, nbformat-5.10.3, ngs-tools-1.8.5, pandocfilters-1.5.1, python-Levenshtein-0.22.0, shortuuid-1.0.13, tinycss2-1.2.1, traitlets-5.14.2, widgetsnbextension-4.0.10