Cassiopeia¶

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.

homepage: https://github.com/YosefLab/Cassiopeia

Available installations¶

Cassiopeia version	Supported CPU targets	Supported GPU targets	EESSI version	Module
2.0.0	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`Cassiopeia/2.0.0-foss-2023a`

Extensions¶

Overview of extensions included in Cassiopeia installations

bleach¶

`bleach` version	Cassiopeia modules that include it
6.1.0	`Cassiopeia/2.0.0-foss-2023a`

Cassiopeia¶

`Cassiopeia` version	Cassiopeia modules that include it
2.0.0	`Cassiopeia/2.0.0-foss-2023a`

comm¶

`comm` version	Cassiopeia modules that include it
0.2.2	`Cassiopeia/2.0.0-foss-2023a`

defusedxml¶

`defusedxml` version	Cassiopeia modules that include it
0.7.1	`Cassiopeia/2.0.0-foss-2023a`

deprecation¶

`deprecation` version	Cassiopeia modules that include it
2.1.0	`Cassiopeia/2.0.0-foss-2023a`

fastjsonschema¶

`fastjsonschema` version	Cassiopeia modules that include it
2.19.1	`Cassiopeia/2.0.0-foss-2023a`

hits¶

`hits` version	Cassiopeia modules that include it
0.4.0	`Cassiopeia/2.0.0-foss-2023a`

ipywidgets¶

`ipywidgets` version	Cassiopeia modules that include it
8.1.2	`Cassiopeia/2.0.0-foss-2023a`

itolapi¶

`itolapi` version	Cassiopeia modules that include it
4.1.4	`Cassiopeia/2.0.0-foss-2023a`

jupyter_client¶

`jupyter_client` version	Cassiopeia modules that include it
8.6.1	`Cassiopeia/2.0.0-foss-2023a`

jupyter_core¶

`jupyter_core` version	Cassiopeia modules that include it
5.7.2	`Cassiopeia/2.0.0-foss-2023a`

jupyter_packaging¶

`jupyter_packaging` version	Cassiopeia modules that include it
0.12.3	`Cassiopeia/2.0.0-foss-2023a`

jupyterlab_pygments¶

`jupyterlab_pygments` version	Cassiopeia modules that include it
0.3.0	`Cassiopeia/2.0.0-foss-2023a`

jupyterlab_widgets¶

`jupyterlab_widgets` version	Cassiopeia modules that include it
3.0.10	`Cassiopeia/2.0.0-foss-2023a`

Levenshtein¶

`Levenshtein` version	Cassiopeia modules that include it
0.22.0	`Cassiopeia/2.0.0-foss-2023a`

mistune¶

`mistune` version	Cassiopeia modules that include it
3.0.2	`Cassiopeia/2.0.0-foss-2023a`

nbclient¶

`nbclient` version	Cassiopeia modules that include it
0.10.0	`Cassiopeia/2.0.0-foss-2023a`

nbconvert¶

`nbconvert` version	Cassiopeia modules that include it
7.16.3	`Cassiopeia/2.0.0-foss-2023a`

nbformat¶

`nbformat` version	Cassiopeia modules that include it
5.10.3	`Cassiopeia/2.0.0-foss-2023a`

ngs-tools¶

`ngs-tools` version	Cassiopeia modules that include it
1.8.5	`Cassiopeia/2.0.0-foss-2023a`

pandocfilters¶

`pandocfilters` version	Cassiopeia modules that include it
1.5.1	`Cassiopeia/2.0.0-foss-2023a`

python-Levenshtein¶

`python-Levenshtein` version	Cassiopeia modules that include it
0.22.0	`Cassiopeia/2.0.0-foss-2023a`

shortuuid¶

`shortuuid` version	Cassiopeia modules that include it
1.0.13	`Cassiopeia/2.0.0-foss-2023a`

tinycss2¶

`tinycss2` version	Cassiopeia modules that include it
1.2.1	`Cassiopeia/2.0.0-foss-2023a`

traitlets¶

`traitlets` version	Cassiopeia modules that include it
5.14.2	`Cassiopeia/2.0.0-foss-2023a`

widgetsnbextension¶

`widgetsnbextension` version	Cassiopeia modules that include it
4.0.10	`Cassiopeia/2.0.0-foss-2023a`