BioPerl¶

Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.

homepage: http://www.bioperl.org/

Available installations¶

BioPerl version	Supported CPU targets	Supported GPU targets	EESSI version	Module
1.7.8	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`BioPerl/1.7.8-GCCcore-12.2.0`
1.7.8	`generic`: `aarch64`, `x86_64` Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace` AMD: `zen2`, `zen3`, `zen4` Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`	(none)	2023.06	`BioPerl/1.7.8-GCCcore-12.3.0`

Extensions¶

Overview of extensions included in BioPerl installations

Bio::Procedural¶

`Bio::Procedural` version	BioPerl modules that include it
1.7.4	`BioPerl/1.7.8-GCCcore-12.2.0` `BioPerl/1.7.8-GCCcore-12.3.0`

BioPerl¶

`BioPerl` version	BioPerl modules that include it
1.7.8	`BioPerl/1.7.8-GCCcore-12.2.0` `BioPerl/1.7.8-GCCcore-12.3.0`

XML::Writer¶

`XML::Writer` version	BioPerl modules that include it
0.900	`BioPerl/1.7.8-GCCcore-12.2.0` `BioPerl/1.7.8-GCCcore-12.3.0`