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Software available in EESSI

Overview of software available in EESSI's production repository software.eessi.io.

730 unique software projects (+ 2965 unique extensions)

  • abc (extension)

    abc is a R library that is included as extension in the following software installations:

  • abc.data (extension)

    abc.data is a R library that is included as extension in the following software installations:

  • abe (extension)

    abe is a R library that is included as extension in the following software installations:

  • abind (extension)

    abind is a R library that is included as extension in the following software installations:

  • Abseil (more details)
    https://abseil.io

    Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • absl-py (extension)

    absl-py is a Python package that is included as extension in the following software installations:

  • absl-py (more details)
    https://github.com/abseil/abseil-py

    absl-py is a collection of Python library code for building Python applications. The code is collected from Google's own Python code base, and has been extensively tested and used in production.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • acepack (extension)

    acepack is a R library that is included as extension in the following software installations:

  • acpype (extension)

    acpype is a Python package that is included as extension in the following software installations:

  • acpype (more details)
    https://github.com/alanwilter/acpype

    A tool based in Python to use Antechamber to generate topologies for chemical compounds and to interface with others python applications like CCPN and ARIA.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • activesupport (extension)

    activesupport is a that is included as extension in the following software installations:

  • adabag (extension)

    adabag is a R library that is included as extension in the following software installations:

  • addict (extension)

    addict is a Python package that is included as extension in the following software installations:

  • addressable (extension)

    addressable is a that is included as extension in the following software installations:

  • ade4 (extension)

    ade4 is a R library that is included as extension in the following software installations:

  • ADGofTest (extension)

    ADGofTest is a R library that is included as extension in the following software installations:

  • admisc (extension)

    admisc is a R library that is included as extension in the following software installations:

  • adwaita-icon-theme (extension)

    adwaita-icon-theme is a that is included as extension in the following software installations:

  • affxparser (extension)

    affxparser is a R library that is included as extension in the following software installations:

  • affy (extension)

    affy is a R library that is included as extension in the following software installations:

  • affycoretools (extension)

    affycoretools is a R library that is included as extension in the following software installations:

  • affyio (extension)

    affyio is a R library that is included as extension in the following software installations:

  • aggregation (extension)

    aggregation is a R library that is included as extension in the following software installations:

  • AgiMicroRna (extension)

    AgiMicroRna is a R library that is included as extension in the following software installations:

  • agricolae (extension)

    agricolae is a R library that is included as extension in the following software installations:

  • AICcmodavg (extension)

    AICcmodavg is a R library that is included as extension in the following software installations:

  • aiida-core (extension)

    aiida-core is a Python package that is included as extension in the following software installations:

  • aiida-core (more details)
    https://www.aiida.net

    Bundle of Python packages required to run AiiDA. An open-source Python infrastructure to help researchers with automating, managing, persisting, sharing and reproducing the complex workflows associated with modern computational science and all associated data.

    Available in EESSI versions:
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • aiida-shell (extension)

    aiida-shell is a Python package that is included as extension in the following software installations:

  • aiida-shell (more details)
    https://aiida-shell.readthedocs.io/en/latest

    AiiDA plugin that makes running shell commands easy. Run any shell executable without writing a dedicated plugin or parser.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • aio-pika (extension)

    aio-pika is a Python package that is included as extension in the following software installations:

  • aiohttp (extension)

    aiohttp is a Python package that is included as extension in the following software installations:

  • aiohttp (more details)
    https://github.com/aio-libs/aiohttp

    Asynchronous HTTP client/server framework for asyncio and Python.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • aioitertools (extension)

    aioitertools is a Python package that is included as extension in the following software installations:

  • aiormq (extension)

    aiormq is a Python package that is included as extension in the following software installations:

  • aiosignal (extension)

    aiosignal is a Python package that is included as extension in the following software installations:

  • AITW-microstructures (extension)

    AITW-microstructures is a Python package that is included as extension in the following software installations:

  • AITW-microstructures (more details)
    https://www.ai-transpwood-project.eu

    AI-TranspWood - Generate realistic microstructure models of wood (birch, spruce, etc.) from a set of given parameters. This is a port of the original MATLAB code to Python.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • AITW-stiffness (extension)

    AITW-stiffness is a Python package that is included as extension in the following software installations:

  • AITW-stiffness (more details)
    https://www.ai-transpwood-project.eu

    AI-TranspWood - Neural network surrogate model for computing macroscopic stiffness parameters of wood fibers from given microscopic parameters.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • AITW-viscosity (extension)

    AITW-viscosity is a Python package that is included as extension in the following software installations:

  • AITW-viscosity (more details)
    https://www.ai-transpwood-project.eu

    AI-TranspWood - AiiDA workchain to compute the shear viscosity of molecular liquids, starting from a SMILES string of a molecule and using GROMACS to perform the molecular dynamics simulations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • akima (extension)

    akima is a R library that is included as extension in the following software installations:

  • alabama (extension)

    alabama is a R library that is included as extension in the following software installations:

  • alabaster (extension)

    alabaster is a Python package that is included as extension in the following software installations:

  • ALDEx2 (extension)

    ALDEx2 is a R library that is included as extension in the following software installations:

  • alembic (extension)

    alembic is a Python package that is included as extension in the following software installations:

  • AlgDesign (extension)

    AlgDesign is a R library that is included as extension in the following software installations:

  • Algorithm::Dependency (extension)

    Algorithm::Dependency is a Perl module that is included as extension in the following software installations:

  • Algorithm::Diff (extension)

    Algorithm::Diff is a Perl module that is included as extension in the following software installations:

  • aliased (extension)

    aliased is a Perl module that is included as extension in the following software installations:

  • Alien::Base (extension)

    Alien::Base is a Perl module that is included as extension in the following software installations:

  • Alien::Build::Plugin::Download::GitLab (extension)

    Alien::Build::Plugin::Download::GitLab is a Perl module that is included as extension in the following software installations:

  • Alien::Libxml2 (extension)

    Alien::Libxml2 is a Perl module that is included as extension in the following software installations:

  • ALL (more details)
    https://gitlab.jsc.fz-juelich.de/SLMS/loadbalancing

    A Load Balancing Library (ALL) aims to provide an easy way to include dynamic domain-based load balancing into particle based simulation codes. The library is developed in the Simulation Laboratory Molecular Systems of the Jülich Supercomputing Centre at Forschungszentrum Jülich.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ALL (extension)

    ALL is a R library that is included as extension in the following software installations:

  • alluvial (extension)

    alluvial is a R library that is included as extension in the following software installations:

  • alsa-lib (more details)
    https://www.alsa-project.org

    The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • AMAPVox (extension)

    AMAPVox is a R library that is included as extension in the following software installations:

  • AmberTools (more details)
    https://ambermd.org

    AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • amdahl (more details)
    https://github.com/hpc-carpentry/amdahl

    This Python module contains a pseudo-application that can be used as a black box to reproduce Amdahl's Law. It does not do real calculations, nor any real communication, so can easily be overloaded.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ANCOMBC (extension)

    ANCOMBC is a R library that is included as extension in the following software installations:

  • animation (extension)

    animation is a R library that is included as extension in the following software installations:

  • aniso8601 (extension)

    aniso8601 is a Python package that is included as extension in the following software installations:

  • annaffy (extension)

    annaffy is a R library that is included as extension in the following software installations:

  • anndata (extension)

    anndata is a Python package that is included as extension in the following software installations:

  • anndata (more details)
    https://github.com/scverse/anndata

    anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • annotate (extension)

    annotate is a R library that is included as extension in the following software installations:

  • annotated_doc (extension)

    annotated_doc is a Python package that is included as extension in the following software installations:

  • annotated_types (extension)

    annotated_types is a Python package that is included as extension in the following software installations:

  • AnnotationDbi (extension)

    AnnotationDbi is a R library that is included as extension in the following software installations:

  • AnnotationFilter (extension)

    AnnotationFilter is a R library that is included as extension in the following software installations:

  • AnnotationForge (extension)

    AnnotationForge is a R library that is included as extension in the following software installations:

  • AnnotationHub (extension)

    AnnotationHub is a R library that is included as extension in the following software installations:

  • ant (more details)
    https://ant.apache.org

    Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ANTLR (more details)
    https://www.antlr2.org

    ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • antlr4-python3-runtime (extension)

    antlr4-python3-runtime is a Python package that is included as extension in the following software installations:

  • AnyEvent (extension)

    AnyEvent is a Perl module that is included as extension in the following software installations:

  • anyio (extension)

    anyio is a Python package that is included as extension in the following software installations:

  • anytime (extension)

    anytime is a R library that is included as extension in the following software installations:

  • AOCL-BLAS (more details)
    https://github.com/amd/blis

    AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntel
    Supported GPU families: (none)

  • aod (extension)

    aod is a R library that is included as extension in the following software installations:

  • AOFlagger (more details)
    https://aoflagger.readthedocs.io

    The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • apcluster (extension)

    apcluster is a R library that is included as extension in the following software installations:

  • ape (extension)

    ape is a R library that is included as extension in the following software installations:

  • aplot (extension)

    aplot is a R library that is included as extension in the following software installations:

  • App::Cmd (extension)

    App::Cmd is a Perl module that is included as extension in the following software installations:

  • App::cpanminus (extension)

    App::cpanminus is a Perl module that is included as extension in the following software installations:

  • AppConfig (extension)

    AppConfig is a Perl module that is included as extension in the following software installations:

  • appdirs (extension)

    appdirs is a Python package that is included as extension in the following software installations:

  • archive-path (extension)

    archive-path is a Python package that is included as extension in the following software installations:

  • Archive-Zip (more details)
    https://metacpan.org/pod/Archive::Zip

    Provide an interface to ZIP archive files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Archive::Extract (extension)

    Archive::Extract is a Perl module that is included as extension in the following software installations:

  • archspec (more details)
    https://github.com/archspec/archspec

    A library for detecting, labeling, and reasoning about microarchitectures

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • argcomplete (extension)

    argcomplete is a Python package that is included as extension in the following software installations:

  • argon2-cffi-bindings (extension)

    argon2-cffi-bindings is a Python package that is included as extension in the following software installations:

  • argon2_cffi (extension)

    argon2_cffi is a Python package that is included as extension in the following software installations:

  • argparse (extension)

    argparse is a R library that is included as extension in the following software installations:

  • argparse-dataclass (extension)

    argparse-dataclass is a Python package that is included as extension in the following software installations:

  • aricode (extension)

    aricode is a R library that is included as extension in the following software installations:

  • arm (extension)

    arm is a R library that is included as extension in the following software installations:

  • Armadillo (more details)
    https://arma.sourceforge.net

    Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • aroma.affymetrix (extension)

    aroma.affymetrix is a R library that is included as extension in the following software installations:

  • aroma.apd (extension)

    aroma.apd is a R library that is included as extension in the following software installations:

  • aroma.core (extension)

    aroma.core is a R library that is included as extension in the following software installations:

  • aroma.light (extension)

    aroma.light is a R library that is included as extension in the following software installations:

  • arpack-ng (more details)
    https://github.com/opencollab/arpack-ng

    ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • arr-pm (extension)

    arr-pm is a that is included as extension in the following software installations:

  • Array::Transpose (extension)

    Array::Transpose is a Perl module that is included as extension in the following software installations:

  • Array::Utils (extension)

    Array::Utils is a Perl module that is included as extension in the following software installations:

  • array_api_compat (extension)

    array_api_compat is a Python package that is included as extension in the following software installations:

  • arrayhelpers (extension)

    arrayhelpers is a R library that is included as extension in the following software installations:

  • Arrow (more details)
    https://arrow.apache.org

    Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • arrow (extension)

    arrow is a Python package that is included as extension in the following software installations:

  • arrow-R (more details)
    https://cran.r-project.org/web/packages/arrow

    R interface to the Apache Arrow C++ library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ArviZ (extension)

    ArviZ is a Python package that is included as extension in the following software installations:

  • ArviZ (more details)
    https://github.com/arviz-devs/arviz

    Exploratory analysis of Bayesian models with Python

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • asciitree (extension)

    asciitree is a Python package that is included as extension in the following software installations:

  • ase (extension)

    ase is a Python package that is included as extension in the following software installations:

  • ASE (more details)
    https://wiki.fysik.dtu.dk/ase

    ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ase-ext (extension)

    ase-ext is a Python package that is included as extension in the following software installations:

  • asgiref (extension)

    asgiref is a Python package that is included as extension in the following software installations:

  • ash (extension)

    ash is a R library that is included as extension in the following software installations:

  • askpass (extension)

    askpass is a R library that is included as extension in the following software installations:

  • asn1crypto (extension)

    asn1crypto is a Python package that is included as extension in the following software installations:

  • asnipe (extension)

    asnipe is a R library that is included as extension in the following software installations:

  • assertive (extension)

    assertive is a R library that is included as extension in the following software installations:

  • assertive.base (extension)

    assertive.base is a R library that is included as extension in the following software installations:

  • assertive.code (extension)

    assertive.code is a R library that is included as extension in the following software installations:

  • assertive.data (extension)

    assertive.data is a R library that is included as extension in the following software installations:

  • assertive.data.uk (extension)

    assertive.data.uk is a R library that is included as extension in the following software installations:

  • assertive.data.us (extension)

    assertive.data.us is a R library that is included as extension in the following software installations:

  • assertive.datetimes (extension)

    assertive.datetimes is a R library that is included as extension in the following software installations:

  • assertive.files (extension)

    assertive.files is a R library that is included as extension in the following software installations:

  • assertive.matrices (extension)

    assertive.matrices is a R library that is included as extension in the following software installations:

  • assertive.models (extension)

    assertive.models is a R library that is included as extension in the following software installations:

  • assertive.numbers (extension)

    assertive.numbers is a R library that is included as extension in the following software installations:

  • assertive.properties (extension)

    assertive.properties is a R library that is included as extension in the following software installations:

  • assertive.reflection (extension)

    assertive.reflection is a R library that is included as extension in the following software installations:

  • assertive.sets (extension)

    assertive.sets is a R library that is included as extension in the following software installations:

  • assertive.strings (extension)

    assertive.strings is a R library that is included as extension in the following software installations:

  • assertive.types (extension)

    assertive.types is a R library that is included as extension in the following software installations:

  • assertthat (extension)

    assertthat is a R library that is included as extension in the following software installations:

  • assimp (more details)
    https://github.com/assimp/assimp

    Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • assorthead (extension)

    assorthead is a R library that is included as extension in the following software installations:

  • astor (extension)

    astor is a Python package that is included as extension in the following software installations:

  • astropy (extension)

    astropy is a Python package that is included as extension in the following software installations:

  • astropy (more details)
    https://www.astropy.org

    The Astropy Project is a community effort to develop a common core package for Astronomy in Python and foster an ecosystem of interoperable astronomy packages. The Astropy community is committed to supporting diversity and inclusion.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • astropy-iers-data (extension)

    astropy-iers-data is a Python package that is included as extension in the following software installations:

  • astropy-testing (more details)
    https://www.astropy.org

    This bundle contains all dependencies needed to test astropy using pytest.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • asttokens (extension)

    asttokens is a Python package that is included as extension in the following software installations:

  • astunparse (extension)

    astunparse is a Python package that is included as extension in the following software installations:

  • async-lru (extension)

    async-lru is a Python package that is included as extension in the following software installations:

  • async-timeout (extension)

    async-timeout is a Python package that is included as extension in the following software installations:

  • asyncpg (extension)

    asyncpg is a Python package that is included as extension in the following software installations:

  • asyncssh (extension)

    asyncssh is a Python package that is included as extension in the following software installations:

  • at-spi2-atk (more details)
    https://wiki.gnome.org/Accessibility

    AT-SPI 2 toolkit bridge

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • at-spi2-core (more details)
    https://wiki.gnome.org/Accessibility

    Assistive Technology Service Provider Interface.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ATACseqQC (extension)

    ATACseqQC is a R library that is included as extension in the following software installations:

  • ATK (more details)
    https://developer.gnome.org/atk

    ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • atomicwrites (extension)

    atomicwrites is a Python package that is included as extension in the following software installations:

  • attrdict3 (extension)

    attrdict3 is a Python package that is included as extension in the following software installations:

  • attrdict3 (more details)
    https://github.com/pirofti/AttrDict3

    AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • attrs (extension)

    attrs is a Python package that is included as extension in the following software installations:

  • AUC (extension)

    AUC is a R library that is included as extension in the following software installations:

  • AUCell (extension)

    AUCell is a R library that is included as extension in the following software installations:

  • audio (extension)

    audio is a R library that is included as extension in the following software installations:

  • audioread (extension)

    audioread is a Python package that is included as extension in the following software installations:

  • Authen::NTLM (extension)

    Authen::NTLM is a Perl module that is included as extension in the following software installations:

  • Authen::SASL (extension)

    Authen::SASL is a Perl module that is included as extension in the following software installations:

  • Autoconf (more details)
    https://www.gnu.org/software/autoconf

    Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • AutoLoader (extension)

    AutoLoader is a Perl module that is included as extension in the following software installations:

  • Automake (more details)
    https://www.gnu.org/software/automake/automake.html

    Automake: GNU Standards-compliant Makefile generator

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Autotools (more details)
    https://autotools.io

    This bundle collect the standard GNU build tools: Autoconf, Automake and libtool

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • aws (extension)

    aws is a R library that is included as extension in the following software installations:

  • aws.s3 (extension)

    aws.s3 is a R library that is included as extension in the following software installations:

  • aws.signature (extension)

    aws.signature is a R library that is included as extension in the following software installations:

  • awsMethods (extension)

    awsMethods is a R library that is included as extension in the following software installations:

  • b (extension)

    b is a R library that is included as extension in the following software installations:

  • B::COW (extension)

    B::COW is a Perl module that is included as extension in the following software installations:

  • B::Hooks::EndOfScope (extension)

    B::Hooks::EndOfScope is a Perl module that is included as extension in the following software installations:

  • B::Lint (extension)

    B::Lint is a Perl module that is included as extension in the following software installations:

  • Babel (extension)

    Babel is a Python package that is included as extension in the following software installations:

  • babelgene (extension)

    babelgene is a R library that is included as extension in the following software installations:

  • backcall (extension)

    backcall is a Python package that is included as extension in the following software installations:

  • backports (extension)

    backports is a R library that is included as extension in the following software installations:

  • backports (extension)

    backports is a that is included as extension in the following software installations:

  • backports.entry-points-selectable (extension)

    backports.entry-points-selectable is a Python package that is included as extension in the following software installations:

  • backports.functools-lru-cache (extension)

    backports.functools-lru-cache is a Python package that is included as extension in the following software installations:

  • backports.functools_lru_cache (extension)

    backports.functools_lru_cache is a Python package that is included as extension in the following software installations:

  • backports.shutil_get_terminal_size (extension)

    backports.shutil_get_terminal_size is a Python package that is included as extension in the following software installations:

  • bacr (extension)

    bacr is a R library that is included as extension in the following software installations:

  • ballgown (extension)

    ballgown is a R library that is included as extension in the following software installations:

  • BamTools (more details)
    https://github.com/pezmaster31/bamtools

    BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bartMachine (extension)

    bartMachine is a R library that is included as extension in the following software installations:

  • bartMachineJARs (extension)

    bartMachineJARs is a R library that is included as extension in the following software installations:

  • base64 (extension)

    base64 is a R library that is included as extension in the following software installations:

  • base64enc (extension)

    base64enc is a R library that is included as extension in the following software installations:

  • basemap (extension)

    basemap is a Python package that is included as extension in the following software installations:

  • basemap (more details)
    https://matplotlib.org/basemap

    The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • basemap_data (extension)

    basemap_data is a Python package that is included as extension in the following software installations:

  • basilisk (extension)

    basilisk is a R library that is included as extension in the following software installations:

  • basilisk.utils (extension)

    basilisk.utils is a R library that is included as extension in the following software installations:

  • batchelor (extension)

    batchelor is a R library that is included as extension in the following software installations:

  • BatchJobs (extension)

    BatchJobs is a R library that is included as extension in the following software installations:

  • batchmeans (extension)

    batchmeans is a R library that is included as extension in the following software installations:

  • BayesianTools (extension)

    BayesianTools is a R library that is included as extension in the following software installations:

  • BayesLogit (extension)

    BayesLogit is a R library that is included as extension in the following software installations:

  • bayesm (extension)

    bayesm is a R library that is included as extension in the following software installations:

  • BayesPen (extension)

    BayesPen is a R library that is included as extension in the following software installations:

  • bayesplot (extension)

    bayesplot is a R library that is included as extension in the following software installations:

  • bayestestR (extension)

    bayestestR is a R library that is included as extension in the following software installations:

  • baySeq (extension)

    baySeq is a R library that is included as extension in the following software installations:

  • Bazel (more details)
    https://bazel.io

    Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • BB (extension)

    BB is a R library that is included as extension in the following software installations:

  • BBmisc (extension)

    BBmisc is a R library that is included as extension in the following software installations:

  • bbmle (extension)

    bbmle is a R library that is included as extension in the following software installations:

  • BCEE (extension)

    BCEE is a R library that is included as extension in the following software installations:

  • BCFtools (more details)
    https://www.htslib.org

    Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bcgTree (more details)
    https://github.com/molbiodiv/bcgTree

    Automatized phylogenetic tree building from bacterial core genomes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bcrypt (extension)

    bcrypt is a Python package that is included as extension in the following software installations:

  • bcrypt (more details)
    https://github.com/pyca/bcrypt

    Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bdftopcf (extension)

    bdftopcf is a that is included as extension in the following software installations:

  • BDgraph (extension)

    BDgraph is a R library that is included as extension in the following software installations:

  • bdsf (extension)

    bdsf is a Python package that is included as extension in the following software installations:

  • bdsmatrix (extension)

    bdsmatrix is a R library that is included as extension in the following software installations:

  • beachmat (extension)

    beachmat is a R library that is included as extension in the following software installations:

  • beagle-lib (more details)
    https://github.com/beagle-dev/beagle-lib

    beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • beanplot (extension)

    beanplot is a R library that is included as extension in the following software installations:

  • BeautifulSoup (extension)

    BeautifulSoup is a Python package that is included as extension in the following software installations:

  • BeautifulSoup (more details)
    https://www.crummy.com/software/BeautifulSoup

    Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • beepr (extension)

    beepr is a R library that is included as extension in the following software installations:

  • beeswarm (extension)

    beeswarm is a R library that is included as extension in the following software installations:

  • beniget (extension)

    beniget is a Python package that is included as extension in the following software installations:

  • berryFunctions (extension)

    berryFunctions is a R library that is included as extension in the following software installations:

  • betareg (extension)

    betareg is a R library that is included as extension in the following software installations:

  • BH (extension)

    BH is a R library that is included as extension in the following software installations:

  • BiasedUrn (extension)

    BiasedUrn is a R library that is included as extension in the following software installations:

  • bibtex (extension)

    bibtex is a R library that is included as extension in the following software installations:

  • BIEN (extension)

    BIEN is a R library that is included as extension in the following software installations:

  • bigD (extension)

    bigD is a R library that is included as extension in the following software installations:

  • BIGL (extension)

    BIGL is a R library that is included as extension in the following software installations:

  • biglm (extension)

    biglm is a R library that is included as extension in the following software installations:

  • bigmemory (extension)

    bigmemory is a R library that is included as extension in the following software installations:

  • bigmemory.sri (extension)

    bigmemory.sri is a R library that is included as extension in the following software installations:

  • bindeps (extension)

    bindeps is a that is included as extension in the following software installations:

  • bindr (extension)

    bindr is a R library that is included as extension in the following software installations:

  • bindrcpp (extension)

    bindrcpp is a R library that is included as extension in the following software installations:

  • bio (extension)

    bio is a that is included as extension in the following software installations:

  • Bio-DB-HTS (more details)
    https://metacpan.org/release/Bio-DB-HTS

    Read files using HTSlib including BAM/CRAM, Tabix and BCF database files

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Bio-SearchIO-hmmer (more details)
    https://metacpan.org/pod/Bio::SearchIO::hmmer3

    Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible with both version 2 and version 3 of the HMMER package from http://hmmer.org.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bio3d (extension)

    bio3d is a R library that is included as extension in the following software installations:

  • Bio::Procedural (extension)

    Bio::Procedural is a Perl module that is included as extension in the following software installations:

  • Biobase (extension)

    Biobase is a R library that is included as extension in the following software installations:

  • BiocBaseUtils (extension)

    BiocBaseUtils is a R library that is included as extension in the following software installations:

  • BiocFileCache (extension)

    BiocFileCache is a R library that is included as extension in the following software installations:

  • BiocGenerics (extension)

    BiocGenerics is a R library that is included as extension in the following software installations:

  • BiocIO (extension)

    BiocIO is a R library that is included as extension in the following software installations:

  • BiocManager (extension)

    BiocManager is a R library that is included as extension in the following software installations:

  • BiocNeighbors (extension)

    BiocNeighbors is a R library that is included as extension in the following software installations:

  • BiocParallel (extension)

    BiocParallel is a R library that is included as extension in the following software installations:

  • BiocSingular (extension)

    BiocSingular is a R library that is included as extension in the following software installations:

  • BiocStyle (extension)

    BiocStyle is a R library that is included as extension in the following software installations:

  • BiocVersion (extension)

    BiocVersion is a R library that is included as extension in the following software installations:

  • biom (extension)

    biom is a R library that is included as extension in the following software installations:

  • biom-format (more details)
    https://biom-format.org

    The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • biomaRt (extension)

    biomaRt is a R library that is included as extension in the following software installations:

  • biomformat (extension)

    biomformat is a R library that is included as extension in the following software installations:

  • biomod2 (extension)

    biomod2 is a R library that is included as extension in the following software installations:

  • biopandas (extension)

    biopandas is a Python package that is included as extension in the following software installations:

  • BioPerl (extension)

    BioPerl is a Perl module that is included as extension in the following software installations:

  • BioPerl (more details)
    http://www.bioperl.org, https://bioperl.org

    Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Biopython (more details)
    https://www.biopython.org

    Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Biostrings (extension)

    Biostrings is a R library that is included as extension in the following software installations:

  • biovizBase (extension)

    biovizBase is a R library that is included as extension in the following software installations:

  • Bison (more details)
    https://www.gnu.org/software/bison

    Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bit (extension)

    bit is a R library that is included as extension in the following software installations:

  • bit64 (extension)

    bit64 is a R library that is included as extension in the following software installations:

  • bitarray (extension)

    bitarray is a Python package that is included as extension in the following software installations:

  • bitops (extension)

    bitops is a R library that is included as extension in the following software installations:

  • bitstring (extension)

    bitstring is a Python package that is included as extension in the following software installations:

  • BLAST+ (more details)
    https://blast.ncbi.nlm.nih.gov

    Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • blavaan (extension)

    blavaan is a R library that is included as extension in the following software installations:

  • bleach (extension)

    bleach is a Python package that is included as extension in the following software installations:

  • blessed (extension)

    blessed is a Python package that is included as extension in the following software installations:

  • blinker (extension)

    blinker is a Python package that is included as extension in the following software installations:

  • BLIS (more details)
    https://github.com/flame/blis

    BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • blist (extension)

    blist is a Python package that is included as extension in the following software installations:

  • blme (extension)

    blme is a R library that is included as extension in the following software installations:

  • blob (extension)

    blob is a R library that is included as extension in the following software installations:

  • Blosc (more details)
    https://www.blosc.org

    Blosc, an extremely fast, multi-threaded, meta-compressor library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Blosc2 (more details)
    https://www.blosc.org

    Blosc, an extremely fast, multi-threaded, meta-compressor library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • blosc2 (extension)

    blosc2 is a Python package that is included as extension in the following software installations:

  • bluster (extension)

    bluster is a R library that is included as extension in the following software installations:

  • BMA (extension)

    BMA is a R library that is included as extension in the following software installations:

  • bmp (extension)

    bmp is a R library that is included as extension in the following software installations:

  • bnlearn (extension)

    bnlearn is a R library that is included as extension in the following software installations:

  • bokeh (extension)

    bokeh is a Python package that is included as extension in the following software installations:

  • bokeh (more details)
    https://github.com/bokeh/bokeh

    Statistical and novel interactive HTML plots for Python

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bold (extension)

    bold is a R library that is included as extension in the following software installations:

  • boltons (extension)

    boltons is a Python package that is included as extension in the following software installations:

  • bookdown (extension)

    bookdown is a R library that is included as extension in the following software installations:

  • boolean (extension)

    boolean is a Perl module that is included as extension in the following software installations:

  • Boost (more details)
    https://www.boost.org

    Boost provides free peer-reviewed portable C++ source libraries.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Boost.MPI (more details)
    https://www.boost.org

    Boost provides free peer-reviewed portable C++ source libraries.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Boost.Python (more details)
    https://boostorg.github.io/python

    Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Boost.Python-NumPy (more details)
    https://boostorg.github.io/python

    Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • boot (extension)

    boot is a R library that is included as extension in the following software installations:

  • bootstrap (extension)

    bootstrap is a R library that is included as extension in the following software installations:

  • Boruta (extension)

    Boruta is a R library that is included as extension in the following software installations:

  • boto3 (extension)

    boto3 is a Python package that is included as extension in the following software installations:

  • boto3 (more details)
    https://github.com/boto/boto3

    Boto3 is the Amazon Web Services (AWS) Software Development Kit (SDK) for Python, which allows Python developers to write software that makes use of services like Amazon S3 and Amazon EC2.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • botocore (extension)

    botocore is a Python package that is included as extension in the following software installations:

  • Bottleneck (extension)

    Bottleneck is a Python package that is included as extension in the following software installations:

  • bottleneck (extension)

    bottleneck is a Python package that is included as extension in the following software installations:

  • Bowtie2 (more details)
    https://bowtie-bio.sourceforge.net/bowtie2/index.shtml

    Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • brew (extension)

    brew is a R library that is included as extension in the following software installations:

  • brglm (extension)

    brglm is a R library that is included as extension in the following software installations:

  • bridgedist (extension)

    bridgedist is a R library that is included as extension in the following software installations:

  • bridgesampling (extension)

    bridgesampling is a R library that is included as extension in the following software installations:

  • brio (extension)

    brio is a R library that is included as extension in the following software installations:

  • brms (extension)

    brms is a R library that is included as extension in the following software installations:

  • Brobdingnag (extension)

    Brobdingnag is a R library that is included as extension in the following software installations:

  • broom (extension)

    broom is a R library that is included as extension in the following software installations:

  • broom.helpers (extension)

    broom.helpers is a R library that is included as extension in the following software installations:

  • broom.mixed (extension)

    broom.mixed is a R library that is included as extension in the following software installations:

  • Brotli (more details)
    https://github.com/google/brotli

    Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Brunsli (more details)
    https://github.com/google/brunsli

    Brunsli is a lossless JPEG repacking library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • BSgenome (extension)

    BSgenome is a R library that is included as extension in the following software installations:

  • BSgenome.Cfamiliaris.UCSC.canFam3 (extension)

    BSgenome.Cfamiliaris.UCSC.canFam3 is a R library that is included as extension in the following software installations:

  • BSgenome.Hsapiens.UCSC.hg19 (extension)

    BSgenome.Hsapiens.UCSC.hg19 is a R library that is included as extension in the following software installations:

  • BSgenome.Hsapiens.UCSC.hg38 (extension)

    BSgenome.Hsapiens.UCSC.hg38 is a R library that is included as extension in the following software installations:

  • BSgenome.Mmusculus.UCSC.mm10 (extension)

    BSgenome.Mmusculus.UCSC.mm10 is a R library that is included as extension in the following software installations:

  • bslib (extension)

    bslib is a R library that is included as extension in the following software installations:

  • bsseq (extension)

    bsseq is a R library that is included as extension in the following software installations:

  • bst (extension)

    bst is a R library that is included as extension in the following software installations:

  • build (extension)

    build is a Python package that is included as extension in the following software installations:

  • build (more details)
    https://github.com/pypa/build

    A simple, correct Python build frontend.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • buildenv (more details)
    None

    This module sets a group of environment variables for compilers, linkers, maths libraries, etc., that you can use to easily transition between toolchains when building your software. To query the variables being set please use: module show less than this module namemore than

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • bumphunter (extension)

    bumphunter is a R library that is included as extension in the following software installations:

  • bundler (extension)

    bundler is a that is included as extension in the following software installations:

  • Business::ISBN (extension)

    Business::ISBN is a Perl module that is included as extension in the following software installations:

  • Business::ISBN::Data (extension)

    Business::ISBN::Data is a Perl module that is included as extension in the following software installations:

  • BWA (more details)
    https://bio-bwa.sourceforge.net, http://bio-bwa.sourceforge.net

    Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • c (extension)

    c is a R library that is included as extension in the following software installations:

  • c-ares (more details)
    https://c-ares.org

    c-ares is a C library for asynchronous DNS requests (including name resolves)

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ca (extension)

    ca is a R library that is included as extension in the following software installations:

  • cabin (extension)

    cabin is a that is included as extension in the following software installations:

  • CacheControl (extension)

    CacheControl is a Python package that is included as extension in the following software installations:

  • cachecontrol (extension)

    cachecontrol is a Python package that is included as extension in the following software installations:

  • cachelib (extension)

    cachelib is a Python package that is included as extension in the following software installations:

  • cachem (extension)

    cachem is a R library that is included as extension in the following software installations:

  • cachetools (extension)

    cachetools is a Python package that is included as extension in the following software installations:

  • cachy (extension)

    cachy is a Python package that is included as extension in the following software installations:

  • caddy (more details)
    https://caddyserver.com

    Fast and extensible multi-platform HTTP/1-2-3 web server with automatic HTTPS

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • CAGEfightR (extension)

    CAGEfightR is a R library that is included as extension in the following software installations:

  • CAGEr (extension)

    CAGEr is a R library that is included as extension in the following software installations:

  • Cairo (extension)

    Cairo is a R library that is included as extension in the following software installations:

  • cairo (more details)
    https://cairographics.org

    Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • calibrate (extension)

    calibrate is a R library that is included as extension in the following software installations:

  • callr (extension)

    callr is a R library that is included as extension in the following software installations:

  • CAMERA (extension)

    CAMERA is a R library that is included as extension in the following software installations:

  • Canary::Stability (extension)

    Canary::Stability is a Perl module that is included as extension in the following software installations:

  • CapnProto (more details)
    https://capnproto.org

    Cap’n Proto is an insanely fast data interchange format and capability-based RPC system.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Capture::Tiny (extension)

    Capture::Tiny is a Perl module that is included as extension in the following software installations:

  • car (extension)

    car is a R library that is included as extension in the following software installations:

  • carData (extension)

    carData is a R library that is included as extension in the following software installations:

  • cards (extension)

    cards is a R library that is included as extension in the following software installations:

  • caret (extension)

    caret is a R library that is included as extension in the following software installations:

  • cargo-c (more details)
    https://github.com/lu-zero/cargo-c

    Applet for cargo to build and install C-ABI compatible dynamic and static libraries. It produces and installs a correct pkg-config file, a static library and a dynamic library, and a C header to be used by any C (and C-compatible) software.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Carp (extension)

    Carp is a Perl module that is included as extension in the following software installations:

  • Carp::Clan (extension)

    Carp::Clan is a Perl module that is included as extension in the following software installations:

  • Carp::Heavy (extension)

    Carp::Heavy is a Perl module that is included as extension in the following software installations:

  • Cartopy (extension)

    Cartopy is a Python package that is included as extension in the following software installations:

  • Cartopy (more details)
    https://scitools.org.uk/cartopy/docs/latest

    Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • casacore (more details)
    https://github.com/casacore/casacore

    A suite of C++ libraries for radio astronomy data processing. The ephemerides data needs to be in DATA_DIR and the location must be specified at runtime. Thus user's can update them.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Cassiopeia (extension)

    Cassiopeia is a Python package that is included as extension in the following software installations:

  • Cassiopeia (more details)
    https://github.com/YosefLab/Cassiopeia

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Catch2 (more details)
    https://github.com/catchorg/Catch2

    A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Category (extension)

    Category is a R library that is included as extension in the following software installations:

  • catlearn (extension)

    catlearn is a R library that is included as extension in the following software installations:

  • caTools (extension)

    caTools is a R library that is included as extension in the following software installations:

  • Cbc (more details)
    https://github.com/coin-or/Cbc

    Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • CBPS (extension)

    CBPS is a R library that is included as extension in the following software installations:

  • ccache (more details)
    https://ccache.dev

    Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ccdata (extension)

    ccdata is a R library that is included as extension in the following software installations:

  • ccmap (extension)

    ccmap is a R library that is included as extension in the following software installations:

  • CD-HIT (more details)
    http://weizhongli-lab.org/cd-hit

    CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • CDO (more details)
    https://code.zmaw.de/projects/cdo

    CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • celestial (extension)

    celestial is a R library that is included as extension in the following software installations:

  • cellranger (extension)

    cellranger is a R library that is included as extension in the following software installations:

  • Cereal (more details)
    https://uscilab.github.io/cereal

    cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • certifi (extension)

    certifi is a Python package that is included as extension in the following software installations:

  • cf-units (extension)

    cf-units is a Python package that is included as extension in the following software installations:

  • cf_xarray (extension)

    cf_xarray is a Python package that is included as extension in the following software installations:

  • cffi (extension)

    cffi is a Python package that is included as extension in the following software installations:

  • cffi (more details)
    https://cffi.readthedocs.io/en/latest

    C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cfgv (extension)

    cfgv is a Python package that is included as extension in the following software installations:

  • CFITSIO (more details)
    http://heasarc.gsfc.nasa.gov/fitsio, https://heasarc.gsfc.nasa.gov/fitsio

    CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cftime (extension)

    cftime is a Python package that is included as extension in the following software installations:

  • CGAL (more details)
    https://www.cgal.org

    The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cgdsr (extension)

    cgdsr is a R library that is included as extension in the following software installations:

  • CGHbase (extension)

    CGHbase is a R library that is included as extension in the following software installations:

  • CGHcall (extension)

    CGHcall is a R library that is included as extension in the following software installations:

  • cghFLasso (extension)

    cghFLasso is a R library that is included as extension in the following software installations:

  • CGI (extension)

    CGI is a Perl module that is included as extension in the following software installations:

  • Cgl (more details)
    https://github.com/coin-or/Cgl

    The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • changepoint (extension)

    changepoint is a R library that is included as extension in the following software installations:

  • chardet (extension)

    chardet is a Python package that is included as extension in the following software installations:

  • charset-normalizer (extension)

    charset-normalizer is a Python package that is included as extension in the following software installations:

  • charset_normalizer (extension)

    charset_normalizer is a Python package that is included as extension in the following software installations:

  • Check (more details)
    https://libcheck.github.io/check

    Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • checkmate (extension)

    checkmate is a R library that is included as extension in the following software installations:

  • chemometrics (extension)

    chemometrics is a R library that is included as extension in the following software installations:

  • childprocess (extension)

    childprocess is a that is included as extension in the following software installations:

  • ChIPpeakAnno (extension)

    ChIPpeakAnno is a R library that is included as extension in the following software installations:

  • ChIPseeker (extension)

    ChIPseeker is a R library that is included as extension in the following software installations:

  • chk (extension)

    chk is a R library that is included as extension in the following software installations:

  • chkptstanr (extension)

    chkptstanr is a R library that is included as extension in the following software installations:

  • chromVAR (extension)

    chromVAR is a R library that is included as extension in the following software installations:

  • chron (extension)

    chron is a R library that is included as extension in the following software installations:

  • cimfomfa (more details)
    https://github.com/micans/cimfomfa

    This library supports both MCL, a cluster algorithm for graphs, and zoem, a macro/DSL language. It supplies abstractions for memory management, I/O, associative arrays, strings, heaps, and a few other things. The string library has had heavy testing as part of zoem. Both understandably and regrettably I chose long ago to make it C-string-compatible, hence nul bytes may not be part of a string. At some point I hope to rectify this, perhaps unrealistically.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • circlize (extension)

    circlize is a R library that is included as extension in the following software installations:

  • circular (extension)

    circular is a R library that is included as extension in the following software installations:

  • circus (extension)

    circus is a Python package that is included as extension in the following software installations:

  • clamp (extension)

    clamp is a that is included as extension in the following software installations:

  • class (extension)

    class is a R library that is included as extension in the following software installations:

  • Class::Accessor (extension)

    Class::Accessor is a Perl module that is included as extension in the following software installations:

  • Class::Data::Inheritable (extension)

    Class::Data::Inheritable is a Perl module that is included as extension in the following software installations:

  • Class::DBI (extension)

    Class::DBI is a Perl module that is included as extension in the following software installations:

  • Class::DBI::SQLite (extension)

    Class::DBI::SQLite is a Perl module that is included as extension in the following software installations:

  • Class::Inspector (extension)

    Class::Inspector is a Perl module that is included as extension in the following software installations:

  • Class::ISA (extension)

    Class::ISA is a Perl module that is included as extension in the following software installations:

  • Class::Load (extension)

    Class::Load is a Perl module that is included as extension in the following software installations:

  • Class::Load::XS (extension)

    Class::Load::XS is a Perl module that is included as extension in the following software installations:

  • Class::Method::Modifiers (extension)

    Class::Method::Modifiers is a Perl module that is included as extension in the following software installations:

  • Class::Singleton (extension)

    Class::Singleton is a Perl module that is included as extension in the following software installations:

  • Class::Tiny (extension)

    Class::Tiny is a Perl module that is included as extension in the following software installations:

  • Class::Trigger (extension)

    Class::Trigger is a Perl module that is included as extension in the following software installations:

  • Class::XSAccessor (extension)

    Class::XSAccessor is a Perl module that is included as extension in the following software installations:

  • classInt (extension)

    classInt is a R library that is included as extension in the following software installations:

  • cld2 (extension)

    cld2 is a R library that is included as extension in the following software installations:

  • cleo (extension)

    cleo is a Python package that is included as extension in the following software installations:

  • cli (extension)

    cli is a R library that is included as extension in the following software installations:

  • click (extension)

    click is a Python package that is included as extension in the following software installations:

  • click-plugins (extension)

    click-plugins is a Python package that is included as extension in the following software installations:

  • click-spinner (extension)

    click-spinner is a Python package that is included as extension in the following software installations:

  • cligj (extension)

    cligj is a Python package that is included as extension in the following software installations:

  • clikit (extension)

    clikit is a Python package that is included as extension in the following software installations:

  • clipr (extension)

    clipr is a R library that is included as extension in the following software installations:

  • clisymbols (extension)

    clisymbols is a R library that is included as extension in the following software installations:

  • clock (extension)

    clock is a R library that is included as extension in the following software installations:

  • Clone (extension)

    Clone is a Perl module that is included as extension in the following software installations:

  • Clone::Choose (extension)

    Clone::Choose is a Perl module that is included as extension in the following software installations:

  • cloudpickle (extension)

    cloudpickle is a Python package that is included as extension in the following software installations:

  • Clp (more details)
    https://github.com/coin-or/Clp

    Clp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • clue (extension)

    clue is a R library that is included as extension in the following software installations:

  • cluster (extension)

    cluster is a R library that is included as extension in the following software installations:

  • clusterGeneration (extension)

    clusterGeneration is a R library that is included as extension in the following software installations:

  • clusterProfiler (extension)

    clusterProfiler is a R library that is included as extension in the following software installations:

  • clusterRepro (extension)

    clusterRepro is a R library that is included as extension in the following software installations:

  • clustree (extension)

    clustree is a R library that is included as extension in the following software installations:

  • clValid (extension)

    clValid is a R library that is included as extension in the following software installations:

  • CMake (more details)
    https://www.cmake.org

    CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cmna (extension)

    cmna is a R library that is included as extension in the following software installations:

  • cmprsk (extension)

    cmprsk is a R library that is included as extension in the following software installations:

  • cmweather (extension)

    cmweather is a Python package that is included as extension in the following software installations:

  • CNEr (extension)

    CNEr is a R library that is included as extension in the following software installations:

  • cNORM (extension)

    cNORM is a R library that is included as extension in the following software installations:

  • cobalt (extension)

    cobalt is a R library that is included as extension in the following software installations:

  • cobs (extension)

    cobs is a R library that is included as extension in the following software installations:

  • coda (extension)

    coda is a R library that is included as extension in the following software installations:

  • codetools (extension)

    codetools is a R library that is included as extension in the following software installations:

  • coin (extension)

    coin is a R library that is included as extension in the following software installations:

  • CoinUtils (more details)
    https://github.com/coin-or/CoinUtils

    CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • collapse (extension)

    collapse is a R library that is included as extension in the following software installations:

  • coloc (extension)

    coloc is a R library that is included as extension in the following software installations:

  • colorama (extension)

    colorama is a Python package that is included as extension in the following software installations:

  • coloredlogs (extension)

    coloredlogs is a Python package that is included as extension in the following software installations:

  • colorize (more details)
    https://github.com/fazibear/colorize

    Ruby gem for colorizing text using ANSI escape sequences. Extends String class or add a ColorizedString with methods to set the text color, background color and text effects.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • colorlog (extension)

    colorlog is a Python package that is included as extension in the following software installations:

  • colormath (extension)

    colormath is a Python package that is included as extension in the following software installations:

  • colorRamps (extension)

    colorRamps is a R library that is included as extension in the following software installations:

  • colorspace (extension)

    colorspace is a R library that is included as extension in the following software installations:

  • colourpicker (extension)

    colourpicker is a R library that is included as extension in the following software installations:

  • combinat (extension)

    combinat is a R library that is included as extension in the following software installations:

  • ComICS (extension)

    ComICS is a R library that is included as extension in the following software installations:

  • comm (extension)

    comm is a Python package that is included as extension in the following software installations:

  • common::sense (extension)

    common::sense is a Perl module that is included as extension in the following software installations:

  • commonmark (extension)

    commonmark is a Python package that is included as extension in the following software installations:

  • commonmark (extension)

    commonmark is a R library that is included as extension in the following software installations:

  • ComplexHeatmap (extension)

    ComplexHeatmap is a R library that is included as extension in the following software installations:

  • ComplexUpset (extension)

    ComplexUpset is a R library that is included as extension in the following software installations:

  • compositions (extension)

    compositions is a R library that is included as extension in the following software installations:

  • CompQuadForm (extension)

    CompQuadForm is a R library that is included as extension in the following software installations:

  • Compress::Raw::Bzip2 (extension)

    Compress::Raw::Bzip2 is a Perl module that is included as extension in the following software installations:

  • Compress::Raw::Zlib (extension)

    Compress::Raw::Zlib is a Perl module that is included as extension in the following software installations:

  • concurrent-ruby (extension)

    concurrent-ruby is a that is included as extension in the following software installations:

  • conda-inject (extension)

    conda-inject is a Python package that is included as extension in the following software installations:

  • conda-package-streaming (extension)

    conda-package-streaming is a Python package that is included as extension in the following software installations:

  • conditionz (extension)

    conditionz is a R library that is included as extension in the following software installations:

  • Config::General (extension)

    Config::General is a Perl module that is included as extension in the following software installations:

  • Config::INI (extension)

    Config::INI is a Perl module that is included as extension in the following software installations:

  • Config::MVP (extension)

    Config::MVP is a Perl module that is included as extension in the following software installations:

  • Config::MVP::Reader::INI (extension)

    Config::MVP::Reader::INI is a Perl module that is included as extension in the following software installations:

  • Config::Simple (extension)

    Config::Simple is a Perl module that is included as extension in the following software installations:

  • Config::Tiny (extension)

    Config::Tiny is a Perl module that is included as extension in the following software installations:

  • ConfigArgParse (extension)

    ConfigArgParse is a Python package that is included as extension in the following software installations:

  • configargparse (extension)

    configargparse is a Python package that is included as extension in the following software installations:

  • configobj (extension)

    configobj is a Python package that is included as extension in the following software installations:

  • configparser (extension)

    configparser is a Python package that is included as extension in the following software installations:

  • conflicted (extension)

    conflicted is a R library that is included as extension in the following software installations:

  • connection-pool (extension)

    connection-pool is a Python package that is included as extension in the following software installations:

  • connection_pool (extension)

    connection_pool is a that is included as extension in the following software installations:

  • conquer (extension)

    conquer is a R library that is included as extension in the following software installations:

  • ConsensusClusterPlus (extension)

    ConsensusClusterPlus is a R library that is included as extension in the following software installations:

  • ConsRank (extension)

    ConsRank is a R library that is included as extension in the following software installations:

  • Const::Exporter (extension)

    Const::Exporter is a Perl module that is included as extension in the following software installations:

  • Const::Fast (extension)

    Const::Fast is a Perl module that is included as extension in the following software installations:

  • constant (extension)

    constant is a Perl module that is included as extension in the following software installations:

  • contfrac (extension)

    contfrac is a R library that is included as extension in the following software installations:

  • contourpy (extension)

    contourpy is a Python package that is included as extension in the following software installations:

  • conumee (extension)

    conumee is a R library that is included as extension in the following software installations:

  • cooler (extension)

    cooler is a Python package that is included as extension in the following software installations:

  • cooler (more details)
    https://open2c.github.io/cooler

    Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • CoordgenLibs (more details)
    https://github.com/schrodinger/coordgenlibs

    Schrodinger-developed 2D Coordinate Generation

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • copCAR (extension)

    copCAR is a R library that is included as extension in the following software installations:

  • copula (extension)

    copula is a R library that is included as extension in the following software installations:

  • corpcor (extension)

    corpcor is a R library that is included as extension in the following software installations:

  • corrplot (extension)

    corrplot is a R library that is included as extension in the following software installations:

  • coverage (extension)

    coverage is a Python package that is included as extension in the following software installations:

  • coverage (more details)
    https://coverage.readthedocs.io

    Coverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • covr (extension)

    covr is a R library that is included as extension in the following software installations:

  • CovSel (extension)

    CovSel is a R library that is included as extension in the following software installations:

  • covsim (extension)

    covsim is a R library that is included as extension in the following software installations:

  • cowplot (extension)

    cowplot is a R library that is included as extension in the following software installations:

  • coxed (extension)

    coxed is a R library that is included as extension in the following software installations:

  • coxme (extension)

    coxme is a R library that is included as extension in the following software installations:

  • CP2K (more details)
    https://www.cp2k.org

    CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • CPAN::Meta::Check (extension)

    CPAN::Meta::Check is a Perl module that is included as extension in the following software installations:

  • CPAN::Meta::Requirements (extension)

    CPAN::Meta::Requirements is a Perl module that is included as extension in the following software installations:

  • CPAN::Requirements::Dynamic (extension)

    CPAN::Requirements::Dynamic is a Perl module that is included as extension in the following software installations:

  • CPAN::Uploader (extension)

    CPAN::Uploader is a Perl module that is included as extension in the following software installations:

  • CPANPLUS (extension)

    CPANPLUS is a Perl module that is included as extension in the following software installations:

  • cpio (more details)
    https://savannah.gnu.org/projects/cpio

    The cpio package contains tools for archiving.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cplm (extension)

    cplm is a R library that is included as extension in the following software installations:

  • cpp11 (extension)

    cpp11 is a R library that is included as extension in the following software installations:

  • cppy (more details)
    https://github.com/nucleic/cppy

    A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • crashtest (extension)

    crashtest is a Python package that is included as extension in the following software installations:

  • crayon (extension)

    crayon is a R library that is included as extension in the following software installations:

  • crb-blast (extension)

    crb-blast is a that is included as extension in the following software installations:

  • crb-blast (more details)
    https://github.com/cboursnell/crb-blast

    Conditional Reciprocal Best BLAST - high confidence ortholog assignment.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • credentials (extension)

    credentials is a R library that is included as extension in the following software installations:

  • crfsuite (extension)

    crfsuite is a R library that is included as extension in the following software installations:

  • Critic2 (more details)
    https://aoterodelaroza.github.io/critic2

    Critic2 is a program for the analysis of quantum mechanical calculation results in molecules and periodic solids.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • crossmeta (extension)

    crossmeta is a R library that is included as extension in the following software installations:

  • crosstalk (extension)

    crosstalk is a R library that is included as extension in the following software installations:

  • crul (extension)

    crul is a R library that is included as extension in the following software installations:

  • Crypt::DES (extension)

    Crypt::DES is a Perl module that is included as extension in the following software installations:

  • Crypt::Rijndael (extension)

    Crypt::Rijndael is a Perl module that is included as extension in the following software installations:

  • cryptography (extension)

    cryptography is a Python package that is included as extension in the following software installations:

  • cryptography (more details)
    https://github.com/pyca/cryptography

    cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cSEM (extension)

    cSEM is a R library that is included as extension in the following software installations:

  • csSAM (extension)

    csSAM is a R library that is included as extension in the following software installations:

  • ctmle (extension)

    ctmle is a R library that is included as extension in the following software installations:

  • cubature (extension)

    cubature is a R library that is included as extension in the following software installations:

  • CubeLib (more details)
    https://www.scalasca.org/software/cube-4.x/download.html

    Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cubelyr (extension)

    cubelyr is a R library that is included as extension in the following software installations:

  • CubeWriter (more details)
    https://www.scalasca.org/software/cube-4.x/download.html

    Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • CUDA-Samples (more details)
    https://github.com/NVIDIA/cuda-samples

    Samples for CUDA Developers which demonstrates features in CUDA Toolkit

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • cummeRbund (extension)

    cummeRbund is a R library that is included as extension in the following software installations:

  • CUnit (more details)
    https://sourceforge.net/projects/cunit

    Automated testing framework for C.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • curl (extension)

    curl is a R library that is included as extension in the following software installations:

  • cURL (more details)
    https://curl.haxx.se

    libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cutadapt (extension)

    cutadapt is a Python package that is included as extension in the following software installations:

  • cutadapt (more details)
    https://opensource.scilifelab.se/projects/cutadapt

    Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • cvAUC (extension)

    cvAUC is a R library that is included as extension in the following software installations:

  • CVST (extension)

    CVST is a R library that is included as extension in the following software installations:

  • CVXR (extension)

    CVXR is a R library that is included as extension in the following software installations:

  • Cwd (extension)

    Cwd is a Perl module that is included as extension in the following software installations:

  • Cwd::Guard (extension)

    Cwd::Guard is a Perl module that is included as extension in the following software installations:

  • cwl-upgrader (extension)

    cwl-upgrader is a Python package that is included as extension in the following software installations:

  • cwl-utils (extension)

    cwl-utils is a Python package that is included as extension in the following software installations:

  • cwltool (extension)

    cwltool is a Python package that is included as extension in the following software installations:

  • cwltool (more details)
    https://cwltool.readthedocs.io

    This is the reference implementation of the Common Workflow Language open standards. It is intended to be feature complete and provide comprehensive validation of CWL files as well as provide other tools related to working with CWL.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Cycler (extension)

    Cycler is a Python package that is included as extension in the following software installations:

  • cycler (extension)

    cycler is a Python package that is included as extension in the following software installations:

  • Cython (more details)
    https://cython.org

    Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Cython (extension)

    Cython is a Python package that is included as extension in the following software installations:

  • cytolib (extension)

    cytolib is a R library that is included as extension in the following software installations:

  • CytoML (extension)

    CytoML is a R library that is included as extension in the following software installations:

  • cytoolz (extension)

    cytoolz is a Python package that is included as extension in the following software installations:

  • d (extension)

    d is a R library that is included as extension in the following software installations:

  • d3Network (extension)

    d3Network is a R library that is included as extension in the following software installations:

  • dada2 (extension)

    dada2 is a R library that is included as extension in the following software installations:

  • dagitty (extension)

    dagitty is a R library that is included as extension in the following software installations:

  • dask (extension)

    dask is a Python package that is included as extension in the following software installations:

  • dask (more details)
    https://dask.org

    Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • dask-jobqueue (extension)

    dask-jobqueue is a Python package that is included as extension in the following software installations:

  • dask-mpi (extension)

    dask-mpi is a Python package that is included as extension in the following software installations:

  • data.table (extension)

    data.table is a R library that is included as extension in the following software installations:

  • data.tree (extension)

    data.tree is a R library that is included as extension in the following software installations:

  • Data::Dump (extension)

    Data::Dump is a Perl module that is included as extension in the following software installations:

  • Data::Dumper (extension)

    Data::Dumper is a Perl module that is included as extension in the following software installations:

  • Data::Dumper::Concise (extension)

    Data::Dumper::Concise is a Perl module that is included as extension in the following software installations:

  • Data::Grove (extension)

    Data::Grove is a Perl module that is included as extension in the following software installations:

  • Data::OptList (extension)

    Data::OptList is a Perl module that is included as extension in the following software installations:

  • Data::Section (extension)

    Data::Section is a Perl module that is included as extension in the following software installations:

  • Data::Section::Simple (extension)

    Data::Section::Simple is a Perl module that is included as extension in the following software installations:

  • Data::Stag (extension)

    Data::Stag is a Perl module that is included as extension in the following software installations:

  • Data::Types (extension)

    Data::Types is a Perl module that is included as extension in the following software installations:

  • Data::UUID (extension)

    Data::UUID is a Perl module that is included as extension in the following software installations:

  • databricks_sdk (extension)

    databricks_sdk is a Python package that is included as extension in the following software installations:

  • DataCombine (extension)

    DataCombine is a R library that is included as extension in the following software installations:

  • datawizard (extension)

    datawizard is a R library that is included as extension in the following software installations:

  • date (extension)

    date is a R library that is included as extension in the following software installations:

  • Date::Handler (extension)

    Date::Handler is a Perl module that is included as extension in the following software installations:

  • Date::Language (extension)

    Date::Language is a Perl module that is included as extension in the following software installations:

  • DateTime (extension)

    DateTime is a Perl module that is included as extension in the following software installations:

  • DateTime::Locale (extension)

    DateTime::Locale is a Perl module that is included as extension in the following software installations:

  • DateTime::TimeZone (extension)

    DateTime::TimeZone is a Perl module that is included as extension in the following software installations:

  • DateTime::Tiny (extension)

    DateTime::Tiny is a Perl module that is included as extension in the following software installations:

  • datrie (extension)

    datrie is a Python package that is included as extension in the following software installations:

  • DB (more details)
    https://www.oracle.com/technetwork/products/berkeleydb

    Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • DB_File (more details)
    https://perldoc.perl.org/DB_File.html

    Perl5 access to Berkeley DB version 1.x.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • dbarts (extension)

    dbarts is a R library that is included as extension in the following software installations:

  • DBD::CSV (extension)

    DBD::CSV is a Perl module that is included as extension in the following software installations:

  • DBD::SQLite (extension)

    DBD::SQLite is a Perl module that is included as extension in the following software installations:

  • DBI (extension)

    DBI is a Perl module that is included as extension in the following software installations:

  • DBI (extension)

    DBI is a R library that is included as extension in the following software installations:

  • DBIx::Admin::CreateTable (extension)

    DBIx::Admin::CreateTable is a Perl module that is included as extension in the following software installations:

  • DBIx::Admin::DSNManager (extension)

    DBIx::Admin::DSNManager is a Perl module that is included as extension in the following software installations:

  • DBIx::Admin::TableInfo (extension)

    DBIx::Admin::TableInfo is a Perl module that is included as extension in the following software installations:

  • DBIx::ContextualFetch (extension)

    DBIx::ContextualFetch is a Perl module that is included as extension in the following software installations:

  • DBIx::Simple (extension)

    DBIx::Simple is a Perl module that is included as extension in the following software installations:

  • dbplyr (extension)

    dbplyr is a R library that is included as extension in the following software installations:

  • dbscan (extension)

    dbscan is a R library that is included as extension in the following software installations:

  • dcurver (extension)

    dcurver is a R library that is included as extension in the following software installations:

  • ddalpha (extension)

    ddalpha is a R library that is included as extension in the following software installations:

  • ddPCRclust (extension)

    ddPCRclust is a R library that is included as extension in the following software installations:

  • deal (extension)

    deal is a R library that is included as extension in the following software installations:

  • deap (extension)

    deap is a Python package that is included as extension in the following software installations:

  • debugme (extension)

    debugme is a R library that is included as extension in the following software installations:

  • debugpy (extension)

    debugpy is a Python package that is included as extension in the following software installations:

  • DECIPHER (extension)

    DECIPHER is a R library that is included as extension in the following software installations:

  • DeconRNASeq (extension)

    DeconRNASeq is a R library that is included as extension in the following software installations:

  • decontam (extension)

    decontam is a R library that is included as extension in the following software installations:

  • decorator (extension)

    decorator is a Python package that is included as extension in the following software installations:

  • decoupleR (extension)

    decoupleR is a R library that is included as extension in the following software installations:

  • defusedxml (extension)

    defusedxml is a Python package that is included as extension in the following software installations:

  • DEGseq (extension)

    DEGseq is a R library that is included as extension in the following software installations:

  • DelayedArray (extension)

    DelayedArray is a R library that is included as extension in the following software installations:

  • DelayedMatrixStats (extension)

    DelayedMatrixStats is a R library that is included as extension in the following software installations:

  • deldir (extension)

    deldir is a R library that is included as extension in the following software installations:

  • dendextend (extension)

    dendextend is a R library that is included as extension in the following software installations:

  • DendroPy (more details)
    https://dendropy.org

    A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • densEstBayes (extension)

    densEstBayes is a R library that is included as extension in the following software installations:

  • DEoptim (extension)

    DEoptim is a R library that is included as extension in the following software installations:

  • DEoptimR (extension)

    DEoptimR is a R library that is included as extension in the following software installations:

  • Deprecated (more details)
    https://github.com/tantale/deprecated

    If you need to mark a function or a method as deprecated, you can use the @deprecated decorator.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • deprecation (extension)

    deprecation is a Python package that is included as extension in the following software installations:

  • DepthProc (extension)

    DepthProc is a R library that is included as extension in the following software installations:

  • derfinder (extension)

    derfinder is a R library that is included as extension in the following software installations:

  • derfinderHelper (extension)

    derfinderHelper is a R library that is included as extension in the following software installations:

  • Deriv (extension)

    Deriv is a R library that is included as extension in the following software installations:

  • desc (extension)

    desc is a R library that is included as extension in the following software installations:

  • DescTools (extension)

    DescTools is a R library that is included as extension in the following software installations:

  • DESeq2 (extension)

    DESeq2 is a R library that is included as extension in the following software installations:

  • deSolve (extension)

    deSolve is a R library that is included as extension in the following software installations:

  • Devel::CheckCompiler (extension)

    Devel::CheckCompiler is a Perl module that is included as extension in the following software installations:

  • Devel::CheckLib (extension)

    Devel::CheckLib is a Perl module that is included as extension in the following software installations:

  • Devel::Cycle (extension)

    Devel::Cycle is a Perl module that is included as extension in the following software installations:

  • Devel::FindPerl (extension)

    Devel::FindPerl is a Perl module that is included as extension in the following software installations:

  • Devel::GlobalDestruction (extension)

    Devel::GlobalDestruction is a Perl module that is included as extension in the following software installations:

  • Devel::OverloadInfo (extension)

    Devel::OverloadInfo is a Perl module that is included as extension in the following software installations:

  • Devel::Size (extension)

    Devel::Size is a Perl module that is included as extension in the following software installations:

  • Devel::StackTrace (extension)

    Devel::StackTrace is a Perl module that is included as extension in the following software installations:

  • devtools (extension)

    devtools is a R library that is included as extension in the following software installations:

  • dfidx (extension)

    dfidx is a R library that is included as extension in the following software installations:

  • dftd4 (more details)
    https://dftd4.readthedocs.io

    The dftd4 project provides an implementation of the generally applicable, charge dependent London-dispersion correction, termed DFT-D4.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • DHARMa (extension)

    DHARMa is a R library that is included as extension in the following software installations:

  • dHSIC (extension)

    dHSIC is a R library that is included as extension in the following software installations:

  • diagram (extension)

    diagram is a R library that is included as extension in the following software installations:

  • DiagrammeR (extension)

    DiagrammeR is a R library that is included as extension in the following software installations:

  • DIAMOND (more details)
    https://github.com/bbuchfink/diamond

    Accelerated BLAST compatible local sequence aligner

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • DiceKriging (extension)

    DiceKriging is a R library that is included as extension in the following software installations:

  • dichromat (extension)

    dichromat is a R library that is included as extension in the following software installations:

  • diff-lcs (extension)

    diff-lcs is a that is included as extension in the following software installations:

  • diffcyt (extension)

    diffcyt is a R library that is included as extension in the following software installations:

  • diffobj (extension)

    diffobj is a R library that is included as extension in the following software installations:

  • digest (extension)

    digest is a R library that is included as extension in the following software installations:

  • Digest::HMAC (extension)

    Digest::HMAC is a Perl module that is included as extension in the following software installations:

  • Digest::MD5::File (extension)

    Digest::MD5::File is a Perl module that is included as extension in the following software installations:

  • Digest::SHA1 (extension)

    Digest::SHA1 is a Perl module that is included as extension in the following software installations:

  • dill (more details)
    https://pypi.org/project/dill

    dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • dimRed (extension)

    dimRed is a R library that is included as extension in the following software installations:

  • diptest (extension)

    diptest is a R library that is included as extension in the following software installations:

  • dir.expiry (extension)

    dir.expiry is a R library that is included as extension in the following software installations:

  • DIRAC (more details)
    http://www.diracprogram.org

    DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electron Calculations

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • directlabels (extension)

    directlabels is a R library that is included as extension in the following software installations:

  • DirichletMultinomial (extension)

    DirichletMultinomial is a R library that is included as extension in the following software installations:

  • DiscriMiner (extension)

    DiscriMiner is a R library that is included as extension in the following software installations:

  • disk_objectstore (extension)

    disk_objectstore is a Python package that is included as extension in the following software installations:

  • dismo (extension)

    dismo is a R library that is included as extension in the following software installations:

  • Dist::CheckConflicts (extension)

    Dist::CheckConflicts is a Perl module that is included as extension in the following software installations:

  • Dist::Zilla (extension)

    Dist::Zilla is a Perl module that is included as extension in the following software installations:

  • distillery (extension)

    distillery is a R library that is included as extension in the following software installations:

  • distlib (extension)

    distlib is a Python package that is included as extension in the following software installations:

  • distr (extension)

    distr is a R library that is included as extension in the following software installations:

  • distrEx (extension)

    distrEx is a R library that is included as extension in the following software installations:

  • distributed (extension)

    distributed is a Python package that is included as extension in the following software installations:

  • distributional (extension)

    distributional is a R library that is included as extension in the following software installations:

  • DistributionUtils (extension)

    DistributionUtils is a R library that is included as extension in the following software installations:

  • distro (extension)

    distro is a Python package that is included as extension in the following software installations:

  • diveRsity (extension)

    diveRsity is a R library that is included as extension in the following software installations:

  • dlb (more details)
    https://pm.bsc.es/dlb

    DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • dlm (extension)

    dlm is a R library that is included as extension in the following software installations:

  • dm-tree (more details)
    https://github.com/deepmind/tree

    dm-tree provides tree, a library for working with nested data structures. In a way, tree generalizes the builtin map function which only supports flat sequences, and allows to apply a function to each "leaf" preserving the overall structure.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • DMCfun (extension)

    DMCfun is a R library that is included as extension in the following software installations:

  • DNABarcodes (extension)

    DNABarcodes is a R library that is included as extension in the following software installations:

  • DNAcopy (extension)

    DNAcopy is a R library that is included as extension in the following software installations:

  • dnaio (extension)

    dnaio is a Python package that is included as extension in the following software installations:

  • dnspython (extension)

    dnspython is a Python package that is included as extension in the following software installations:

  • DO.db (extension)

    DO.db is a R library that is included as extension in the following software installations:

  • doBy (extension)

    doBy is a R library that is included as extension in the following software installations:

  • doc2vec (extension)

    doc2vec is a R library that is included as extension in the following software installations:

  • docker (extension)

    docker is a Python package that is included as extension in the following software installations:

  • docopt (extension)

    docopt is a Python package that is included as extension in the following software installations:

  • docopt (extension)

    docopt is a R library that is included as extension in the following software installations:

  • docrep (extension)

    docrep is a Python package that is included as extension in the following software installations:

  • docstring (extension)

    docstring is a R library that is included as extension in the following software installations:

  • docstring_parser (extension)

    docstring_parser is a Python package that is included as extension in the following software installations:

  • docutils (extension)

    docutils is a Python package that is included as extension in the following software installations:

  • doit (extension)

    doit is a Python package that is included as extension in the following software installations:

  • doMC (extension)

    doMC is a R library that is included as extension in the following software installations:

  • doParallel (extension)

    doParallel is a R library that is included as extension in the following software installations:

  • doRNG (extension)

    doRNG is a R library that is included as extension in the following software installations:

  • DOSE (extension)

    DOSE is a R library that is included as extension in the following software installations:

  • doSNOW (extension)

    doSNOW is a R library that is included as extension in the following software installations:

  • dotCall64 (extension)

    dotCall64 is a R library that is included as extension in the following software installations:

  • double-conversion (more details)
    https://github.com/google/double-conversion

    Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • downlit (extension)

    downlit is a R library that is included as extension in the following software installations:

  • downloader (extension)

    downloader is a R library that is included as extension in the following software installations:

  • Doxygen (more details)
    https://www.doxygen.org, https://www.doxygen.nl

    Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • DP3 (more details)
    https://dp3.readthedocs.io

    DP3: streaming processing pipeline for radio interferometric data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • dpath (extension)

    dpath is a Python package that is included as extension in the following software installations:

  • dplyr (extension)

    dplyr is a R library that is included as extension in the following software installations:

  • dqrng (extension)

    dqrng is a R library that is included as extension in the following software installations:

  • dr (extension)

    dr is a R library that is included as extension in the following software installations:

  • dreamerr (extension)

    dreamerr is a R library that is included as extension in the following software installations:

  • drgee (extension)

    drgee is a R library that is included as extension in the following software installations:

  • DRIMSeq (extension)

    DRIMSeq is a R library that is included as extension in the following software installations:

  • DropletUtils (extension)

    DropletUtils is a R library that is included as extension in the following software installations:

  • DRR (extension)

    DRR is a R library that is included as extension in the following software installations:

  • drugCombo (extension)

    drugCombo is a R library that is included as extension in the following software installations:

  • DSS (extension)

    DSS is a R library that is included as extension in the following software installations:

  • DT (extension)

    DT is a R library that is included as extension in the following software installations:

  • dtangle (extension)

    dtangle is a R library that is included as extension in the following software installations:

  • dtplyr (extension)

    dtplyr is a R library that is included as extension in the following software installations:

  • DTRreg (extension)

    DTRreg is a R library that is included as extension in the following software installations:

  • dtw (extension)

    dtw is a R library that is included as extension in the following software installations:

  • dulwich (extension)

    dulwich is a Python package that is included as extension in the following software installations:

  • dummies (extension)

    dummies is a R library that is included as extension in the following software installations:

  • dupRadar (extension)

    dupRadar is a R library that is included as extension in the following software installations:

  • dygraphs (extension)

    dygraphs is a R library that is included as extension in the following software installations:

  • dynamicTreeCut (extension)

    dynamicTreeCut is a R library that is included as extension in the following software installations:

  • DynDoc (extension)

    DynDoc is a R library that is included as extension in the following software installations:

  • dysco (more details)
    https://github.com/aroffringa/dysco

    The Dysco compression technique is explained in the article "Compression of interferometric radio-astronomical data", A. R. Offringa (2016; http://arxiv.org/abs/1609.02019). If you use this software, please cite the paper.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • e1071 (extension)

    e1071 is a R library that is included as extension in the following software installations:

  • earth (extension)

    earth is a R library that is included as extension in the following software installations:

  • EasyABC (extension)

    EasyABC is a R library that is included as extension in the following software installations:

  • EasyBuild (more details)
    https://easybuilders.github.io/easybuild

    EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • EBImage (extension)

    EBImage is a R library that is included as extension in the following software installations:

  • ecBuild (more details)
    https://ecbuild.readthedocs.io

    A CMake-based build system, consisting of a collection of CMake macros and functions that ease the managing of software build systems

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ecCodes (more details)
    https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home

    ecCodes is a package developed by ECMWF which provides an application programming interface and a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2, WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding).

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ecdsa (extension)

    ecdsa is a Python package that is included as extension in the following software installations:

  • ECOSolveR (extension)

    ECOSolveR is a R library that is included as extension in the following software installations:

  • edgeR (extension)

    edgeR is a R library that is included as extension in the following software installations:

  • editables (extension)

    editables is a Python package that is included as extension in the following software installations:

  • chmod g+s $EESSI_PROJECT_INSTALL) so that all members of the group have permission to read and write installations. - EESSI_SITE_INSTALL is either defined or not and cannot be used with another environment variable. A site installation is done in a defined location and any installations there are (by default) world readable. - EESSI_CVMFS_INSTALL is either defined or not and cannot be used with another environment variable. A CVMFS installation targets a defined location which will be ingested into CVMFS and is only useful for CVMFS administrators. - If none of the environment variables above are defined, an EESSI_USER_INSTALL is assumed with a value of $HOME/EESSI If both EESSI_USER_INSTALL and EESSI_PROJECT_INSTALL are defined, both sets of installations are exposed, but new installations are created as user installations. Strict installation path checking is enforced by EESSI for EESSI and site installations involving accelerators. In these cases, if you wish to create an accelerator installation you must set the environment variable EESSI_ACCELERATOR_INSTALL (and load/reload this module). AMD, Arm, Intel 2023.06, 2025.06 ">

    EESSI-extend (more details)
    https://eessi.io/docs

    The goal of the European Environment for Scientific Software Installations (EESSI, pronounced as "easy") is to build a common stack of scientific software installations for HPC systems and beyond, including laptops, personal workstations and cloud infrastructure. This module allows you to extend EESSI using the same configuration for EasyBuild as EESSI itself uses. A number of environment variables control the behaviour of the module: - EESSI_USER_INSTALL can be set to a location to install modules for use by the user only. The location must already exist on the filesystem. - EESSI_PROJECT_INSTALL can be set to a location to install modules for use by a project. The location must already exist on the filesystem and you should ensure that the location has the correct Linux group and the SGID permission is set on that directory (chmod g+s $EESSI_PROJECT_INSTALL) so that all members of the group have permission to read and write installations. - EESSI_SITE_INSTALL is either defined or not and cannot be used with another environment variable. A site installation is done in a defined location and any installations there are (by default) world readable. - EESSI_CVMFS_INSTALL is either defined or not and cannot be used with another environment variable. A CVMFS installation targets a defined location which will be ingested into CVMFS and is only useful for CVMFS administrators. - If none of the environment variables above are defined, an EESSI_USER_INSTALL is assumed with a value of $HOME/EESSI If both EESSI_USER_INSTALL and EESSI_PROJECT_INSTALL are defined, both sets of installations are exposed, but new installations are created as user installations. Strict installation path checking is enforced by EESSI for EESSI and site installations involving accelerators. In these cases, if you wish to create an accelerator installation you must set the environment variable EESSI_ACCELERATOR_INSTALL (and load/reload this module).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • egg (extension)

    egg is a R library that is included as extension in the following software installations:

  • Eigen (more details)
    https://eigen.tuxfamily.org

    Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • elementpath (extension)

    elementpath is a Python package that is included as extension in the following software installations:

  • elementR (extension)

    elementR is a R library that is included as extension in the following software installations:

  • elfutils (more details)
    https://elfutils.org

    The elfutils project provides libraries and tools for ELF files and DWARF data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • elfx86exts (more details)
    https://github.com/pkgw/elfx86exts

    Decode binaries and print out which instruction set extensions they use.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ellipse (extension)

    ellipse is a R library that is included as extension in the following software installations:

  • ellipsis (extension)

    ellipsis is a R library that is included as extension in the following software installations:

  • elliptic (extension)

    elliptic is a R library that is included as extension in the following software installations:

  • ELPA (more details)
    https://elpa.mpcdf.mpg.de

    Eigenvalue SoLvers for Petaflop-Applications.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Email::Date::Format (extension)

    Email::Date::Format is a Perl module that is included as extension in the following software installations:

  • emdbook (extension)

    emdbook is a R library that is included as extension in the following software installations:

  • emmeans (extension)

    emmeans is a R library that is included as extension in the following software installations:

  • emmet-core (extension)

    emmet-core is a Python package that is included as extension in the following software installations:

  • emoa (extension)

    emoa is a R library that is included as extension in the following software installations:

  • emulator (extension)

    emulator is a R library that is included as extension in the following software installations:

  • enchant-2 (more details)
    http://rrthomas.github.io/enchant

    Enchant aims to provide a simple but comprehensive abstraction for dealing with different spell checking libraries in a consistent way. A client, such as a text editor or word processor, need not know anything about a specific spell-checker, and since all back-ends are plugins, new spell-checkers can be added without needing any change to the program using Enchant.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Encode (extension)

    Encode is a Perl module that is included as extension in the following software installations:

  • Encode::Locale (extension)

    Encode::Locale is a Perl module that is included as extension in the following software installations:

  • energy (extension)

    energy is a R library that is included as extension in the following software installations:

  • enlighten (extension)

    enlighten is a Python package that is included as extension in the following software installations:

  • ENMeval (extension)

    ENMeval is a R library that is included as extension in the following software installations:

  • enrichplot (extension)

    enrichplot is a R library that is included as extension in the following software installations:

  • EnsDb.Hsapiens.v75 (extension)

    EnsDb.Hsapiens.v75 is a R library that is included as extension in the following software installations:

  • EnsDb.Hsapiens.v79 (extension)

    EnsDb.Hsapiens.v79 is a R library that is included as extension in the following software installations:

  • EnsDb.Hsapiens.v86 (extension)

    EnsDb.Hsapiens.v86 is a R library that is included as extension in the following software installations:

  • ensembldb (extension)

    ensembldb is a R library that is included as extension in the following software installations:

  • entropy (extension)

    entropy is a R library that is included as extension in the following software installations:

  • entrypoints (extension)

    entrypoints is a Python package that is included as extension in the following software installations:

  • EnvStats (extension)

    EnvStats is a R library that is included as extension in the following software installations:

  • epitools (extension)

    epitools is a R library that is included as extension in the following software installations:

  • ergm (extension)

    ergm is a R library that is included as extension in the following software installations:

  • ergm.count (extension)

    ergm.count is a R library that is included as extension in the following software installations:

  • ergm.multi (extension)

    ergm.multi is a R library that is included as extension in the following software installations:

  • Error (extension)

    Error is a Perl module that is included as extension in the following software installations:

  • escape (extension)

    escape is a R library that is included as extension in the following software installations:

  • ESMF (more details)
    https://www.earthsystemcog.org/projects/esmf

    The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • esmpy (extension)

    esmpy is a Python package that is included as extension in the following software installations:

  • ESMPy (more details)
    https://earthsystemmodeling.org/esmpy

    Earth System Modeling Framework (ESMF) Python Interface

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ESPResSo (more details)
    https://espressomd.org/wordpress

    A software package for performing and analyzing scientific Molecular Dynamics simulations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • estimability (extension)

    estimability is a R library that is included as extension in the following software installations:

  • ETE (more details)
    http://etetoolkit.org

    A Python framework for the analysis and visualization of trees

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ethon (extension)

    ethon is a that is included as extension in the following software installations:

  • etils (extension)

    etils is a Python package that is included as extension in the following software installations:

  • Eval::Closure (extension)

    Eval::Closure is a Perl module that is included as extension in the following software installations:

  • evaluate (extension)

    evaluate is a R library that is included as extension in the following software installations:

  • EValue (extension)

    EValue is a R library that is included as extension in the following software installations:

  • evd (extension)

    evd is a R library that is included as extension in the following software installations:

  • EveryBeam (more details)
    https://everybeam.readthedocs.io

    Library that provides the antenna response pattern for several instruments, such as LOFAR (and LOBES), SKA (OSKAR), MWA, JVLA, etc.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Exact (extension)

    Exact is a R library that is included as extension in the following software installations:

  • Exception::Class (extension)

    Exception::Class is a Perl module that is included as extension in the following software installations:

  • exceptiongroup (extension)

    exceptiongroup is a Python package that is included as extension in the following software installations:

  • execnet (extension)

    execnet is a Python package that is included as extension in the following software installations:

  • executing (extension)

    executing is a Python package that is included as extension in the following software installations:

  • expat (more details)
    https://libexpat.github.io

    Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Expect (extension)

    Expect is a Perl module that is included as extension in the following software installations:

  • expecttest (more details)
    https://github.com/ezyang/expecttest

    This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ExperimentHub (extension)

    ExperimentHub is a R library that is included as extension in the following software installations:

  • expm (extension)

    expm is a R library that is included as extension in the following software installations:

  • Exporter (extension)

    Exporter is a Perl module that is included as extension in the following software installations:

  • Exporter::Declare (extension)

    Exporter::Declare is a Perl module that is included as extension in the following software installations:

  • Exporter::Tiny (extension)

    Exporter::Tiny is a Perl module that is included as extension in the following software installations:

  • ExPosition (extension)

    ExPosition is a R library that is included as extension in the following software installations:

  • expsmooth (extension)

    expsmooth is a R library that is included as extension in the following software installations:

  • extension-helpers (extension)

    extension-helpers is a Python package that is included as extension in the following software installations:

  • extraDistr (extension)

    extraDistr is a R library that is included as extension in the following software installations:

  • Extrae (more details)
    https://tools.bsc.es/extrae

    Extrae is the package devoted to generate Paraver trace-files for a post-mortem analysis. Extrae is a tool that uses different interposition mechanisms to inject probes into the target application so as to gather information regarding the application performance.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • extrafont (extension)

    extrafont is a R library that is included as extension in the following software installations:

  • extrafontdb (extension)

    extrafontdb is a R library that is included as extension in the following software installations:

  • extRemes (extension)

    extRemes is a R library that is included as extension in the following software installations:

  • ExtUtils::CBuilder (extension)

    ExtUtils::CBuilder is a Perl module that is included as extension in the following software installations:

  • ExtUtils::Config (extension)

    ExtUtils::Config is a Perl module that is included as extension in the following software installations:

  • ExtUtils::Constant (extension)

    ExtUtils::Constant is a Perl module that is included as extension in the following software installations:

  • ExtUtils::CppGuess (extension)

    ExtUtils::CppGuess is a Perl module that is included as extension in the following software installations:

  • ExtUtils::Helpers (extension)

    ExtUtils::Helpers is a Perl module that is included as extension in the following software installations:

  • ExtUtils::InstallPaths (extension)

    ExtUtils::InstallPaths is a Perl module that is included as extension in the following software installations:

  • ExtUtils::MakeMaker (extension)

    ExtUtils::MakeMaker is a Perl module that is included as extension in the following software installations:

  • ExtUtils::ParseXS (extension)

    ExtUtils::ParseXS is a Perl module that is included as extension in the following software installations:

  • f90wrap (more details)
    https://github.com/jameskermode/f90wrap

    f90wrap is a tool to automatically generate Python extension modules which interface to Fortran code that makes use of derived types. It builds on the capabilities of the popular f2py utility by generating a simpler Fortran 90 interface to the original Fortran code which is then suitable for wrapping with f2py, together with a higher-level Pythonic wrapper that makes the existance of an additional layer transparent to the final user.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FAAD2 (more details)
    https://github.com/knik0/faad2

    FAAD2 is a HE, LC, MAIN and LTP profile, MPEG2 and MPEG-4 AAC decoder. FAAD2 includes code for SBR (HE AAC) decoding.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • facade (extension)

    facade is a that is included as extension in the following software installations:

  • factoextra (extension)

    factoextra is a R library that is included as extension in the following software installations:

  • FactoMineR (extension)

    FactoMineR is a R library that is included as extension in the following software installations:

  • FactorCopula (extension)

    FactorCopula is a R library that is included as extension in the following software installations:

  • fail (extension)

    fail is a R library that is included as extension in the following software installations:

  • FALL3D (more details)
    https://gitlab.com/fall3d-suite/fall3d

    FALL3D is an open-source volcanic ash dispersal model.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fANCOVA (extension)

    fANCOVA is a R library that is included as extension in the following software installations:

  • fansi (extension)

    fansi is a R library that is included as extension in the following software installations:

  • faraday (extension)

    faraday is a that is included as extension in the following software installations:

  • faraday-net_http (extension)

    faraday-net_http is a that is included as extension in the following software installations:

  • faraday_middleware (extension)

    faraday_middleware is a that is included as extension in the following software installations:

  • farver (extension)

    farver is a R library that is included as extension in the following software installations:

  • fastapi (extension)

    fastapi is a Python package that is included as extension in the following software installations:

  • fastcluster (extension)

    fastcluster is a R library that is included as extension in the following software installations:

  • fastDummies (extension)

    fastDummies is a R library that is included as extension in the following software installations:

  • fasteners (extension)

    fasteners is a Python package that is included as extension in the following software installations:

  • fasterize (extension)

    fasterize is a R library that is included as extension in the following software installations:

  • fastGHQuad (extension)

    fastGHQuad is a R library that is included as extension in the following software installations:

  • fastICA (extension)

    fastICA is a R library that is included as extension in the following software installations:

  • fastjet (more details)
    https://fastjet.fr

    A software package for jet finding in pp and e+e- collisions

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fastjet-contrib (more details)
    https://fastjet.hepforge.org/contrib

    3rd party extensions of FastJet

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fastjsonschema (extension)

    fastjsonschema is a Python package that is included as extension in the following software installations:

  • fastlogranktest (extension)

    fastlogranktest is a R library that is included as extension in the following software installations:

  • fastmap (extension)

    fastmap is a R library that is included as extension in the following software installations:

  • fastmatch (extension)

    fastmatch is a R library that is included as extension in the following software installations:

  • FastME (more details)
    http://www.atgc-montpellier.fr/fastme

    FastME: a comprehensive, accurate and fast distance-based phylogeny inference program.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fastp (more details)
    https://github.com/OpenGene/fastp

    A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FastQC (more details)
    https://www.bioinformatics.babraham.ac.uk/projects/fastqc

    FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fBasics (extension)

    fBasics is a R library that is included as extension in the following software installations:

  • fda (extension)

    fda is a R library that is included as extension in the following software installations:

  • FDb.InfiniumMethylation.hg19 (extension)

    FDb.InfiniumMethylation.hg19 is a R library that is included as extension in the following software installations:

  • fdrtool (extension)

    fdrtool is a R library that is included as extension in the following software installations:

  • fds (extension)

    fds is a R library that is included as extension in the following software installations:

  • feather (extension)

    feather is a R library that is included as extension in the following software installations:

  • feature (extension)

    feature is a R library that is included as extension in the following software installations:

  • feh (more details)
    https://feh.finalrewind.org

    feh is an X11 image viewer aimed mostly at console users. Unlike most other viewers, it does not have a fancy GUI, but simply displays images. It is controlled via commandline arguments and configurable key/mouse actions.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FEniCS-Basix (more details)
    https://github.com/FEniCS/basix

    Basix is a finite element definition and tabulation runtime library - C++ library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FEniCS-Basix-Python (more details)
    https://github.com/FEniCS/basix

    Basix is a finite element definition and tabulation runtime library - Python binding

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FEniCS-DOLFINx (more details)
    https://github.com/FEniCS/dolfinx

    DOLFINx is the computational environment of FEniCSx - C++ library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FEniCS-DOLFINx-Python (more details)
    https://github.com/FEniCS/dolfinx

    DOLFINx is the computational environment of FEniCSx - Python binding

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FEniCS-FFCx (more details)
    https://github.com/FEniCS/ffcx

    FFCx is a compiler for finite element variational forms

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FEniCS-ufcx (more details)
    https://github.com/FEniCS/ffcx

    FFCx provides the ufcx.h interface header for generated finite element kernels, used by DOLFINx.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FEniCS-UFL (more details)
    https://github.com/FEniCS/ufl

    The Unified Form Language (UFL) is a domain-specific language for defining variational forms

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Fennec::Lite (extension)

    Fennec::Lite is a Perl module that is included as extension in the following software installations:

  • ff (extension)

    ff is a R library that is included as extension in the following software installations:

  • ffi (extension)

    ffi is a that is included as extension in the following software installations:

  • FFmpeg (more details)
    https://www.ffmpeg.org

    A complete, cross-platform solution to record, convert and stream audio and video.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ffnvcodec (more details)
    https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git

    FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FFTW (more details)
    https://www.fftw.org

    FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fftw (extension)

    fftw is a R library that is included as extension in the following software installations:

  • FFTW.MPI (more details)
    https://www.fftw.org

    FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fftwtools (extension)

    fftwtools is a R library that is included as extension in the following software installations:

  • fgsea (extension)

    fgsea is a R library that is included as extension in the following software installations:

  • fields (extension)

    fields is a R library that is included as extension in the following software installations:

  • File::chdir (extension)

    File::chdir is a Perl module that is included as extension in the following software installations:

  • File::CheckTree (extension)

    File::CheckTree is a Perl module that is included as extension in the following software installations:

  • File::Copy::Recursive (extension)

    File::Copy::Recursive is a Perl module that is included as extension in the following software installations:

  • File::Copy::Recursive::Reduced (extension)

    File::Copy::Recursive::Reduced is a Perl module that is included as extension in the following software installations:

  • File::Find::Rule (extension)

    File::Find::Rule is a Perl module that is included as extension in the following software installations:

  • File::Find::Rule::Perl (extension)

    File::Find::Rule::Perl is a Perl module that is included as extension in the following software installations:

  • File::Grep (extension)

    File::Grep is a Perl module that is included as extension in the following software installations:

  • File::HomeDir (extension)

    File::HomeDir is a Perl module that is included as extension in the following software installations:

  • File::Listing (extension)

    File::Listing is a Perl module that is included as extension in the following software installations:

  • File::Next (extension)

    File::Next is a Perl module that is included as extension in the following software installations:

  • File::Path (extension)

    File::Path is a Perl module that is included as extension in the following software installations:

  • File::pushd (extension)

    File::pushd is a Perl module that is included as extension in the following software installations:

  • File::Remove (extension)

    File::Remove is a Perl module that is included as extension in the following software installations:

  • File::ShareDir (extension)

    File::ShareDir is a Perl module that is included as extension in the following software installations:

  • File::ShareDir::Install (extension)

    File::ShareDir::Install is a Perl module that is included as extension in the following software installations:

  • File::Slurp (extension)

    File::Slurp is a Perl module that is included as extension in the following software installations:

  • File::Slurp::Tiny (extension)

    File::Slurp::Tiny is a Perl module that is included as extension in the following software installations:

  • File::Slurper (extension)

    File::Slurper is a Perl module that is included as extension in the following software installations:

  • File::Spec (extension)

    File::Spec is a Perl module that is included as extension in the following software installations:

  • File::Temp (extension)

    File::Temp is a Perl module that is included as extension in the following software installations:

  • File::Which (extension)

    File::Which is a Perl module that is included as extension in the following software installations:

  • filehash (extension)

    filehash is a R library that is included as extension in the following software installations:

  • filelock (extension)

    filelock is a Python package that is included as extension in the following software installations:

  • filelock (extension)

    filelock is a R library that is included as extension in the following software installations:

  • finalfit (extension)

    finalfit is a R library that is included as extension in the following software installations:

  • findpython (extension)

    findpython is a R library that is included as extension in the following software installations:

  • findpython (extension)

    findpython is a Python package that is included as extension in the following software installations:

  • fiona (extension)

    fiona is a Python package that is included as extension in the following software installations:

  • Fiona (more details)
    https://github.com/Toblerity/Fiona

    Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fishMod (extension)

    fishMod is a R library that is included as extension in the following software installations:

  • fitdistrplus (extension)

    fitdistrplus is a R library that is included as extension in the following software installations:

  • fixest (extension)

    fixest is a R library that is included as extension in the following software installations:

  • fixwhich (extension)

    fixwhich is a that is included as extension in the following software installations:

  • FKSUM (extension)

    FKSUM is a R library that is included as extension in the following software installations:

  • FLAC (more details)
    https://xiph.org/flac

    FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • flashClust (extension)

    flashClust is a R library that is included as extension in the following software installations:

  • Flask (extension)

    Flask is a Python package that is included as extension in the following software installations:

  • flask (extension)

    flask is a Python package that is included as extension in the following software installations:

  • Flask (more details)
    https://flask.palletsprojects.com, https://www.palletsprojects.com/p/flask

    Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Flask-Cors (extension)

    Flask-Cors is a Python package that is included as extension in the following software installations:

  • Flask-RESTful (extension)

    Flask-RESTful is a Python package that is included as extension in the following software installations:

  • Flask-Session (extension)

    Flask-Session is a Python package that is included as extension in the following software installations:

  • flatbuffers (more details)
    https://github.com/google/flatbuffers

    FlatBuffers: Memory Efficient Serialization Library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • flatbuffers-python (more details)
    https://github.com/google/flatbuffers

    Python Flatbuffers runtime library.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • flexcache (extension)

    flexcache is a Python package that is included as extension in the following software installations:

  • flexclust (extension)

    flexclust is a R library that is included as extension in the following software installations:

  • FlexiBLAS (extension)

    FlexiBLAS is a that is included as extension in the following software installations:

  • FlexiBLAS (more details)
    https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release

    FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • flexmix (extension)

    flexmix is a R library that is included as extension in the following software installations:

  • flexparser (extension)

    flexparser is a Python package that is included as extension in the following software installations:

  • flextable (extension)

    flextable is a R library that is included as extension in the following software installations:

  • flit (extension)

    flit is a Python package that is included as extension in the following software installations:

  • flit (more details)
    https://github.com/pypa/flit

    A simple packaging tool for simple packages.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • flit-scm (extension)

    flit-scm is a Python package that is included as extension in the following software installations:

  • flit_core (extension)

    flit_core is a Python package that is included as extension in the following software installations:

  • flit_scm (extension)

    flit_scm is a Python package that is included as extension in the following software installations:

  • flook (more details)
    https://github.com/ElectronicStructureLibrary/flook

    The fortran-Lua-hook library.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • flowAI (extension)

    flowAI is a R library that is included as extension in the following software installations:

  • flowClean (extension)

    flowClean is a R library that is included as extension in the following software installations:

  • flowClust (extension)

    flowClust is a R library that is included as extension in the following software installations:

  • flowCore (extension)

    flowCore is a R library that is included as extension in the following software installations:

  • flowDensity (extension)

    flowDensity is a R library that is included as extension in the following software installations:

  • flowFP (extension)

    flowFP is a R library that is included as extension in the following software installations:

  • flowMerge (extension)

    flowMerge is a R library that is included as extension in the following software installations:

  • flowPeaks (extension)

    flowPeaks is a R library that is included as extension in the following software installations:

  • FlowSOM (extension)

    FlowSOM is a R library that is included as extension in the following software installations:

  • FlowSorted.Blood.EPIC (extension)

    FlowSorted.Blood.EPIC is a R library that is included as extension in the following software installations:

  • FlowSorted.CordBloodCombined.450k (extension)

    FlowSorted.CordBloodCombined.450k is a R library that is included as extension in the following software installations:

  • flowStats (extension)

    flowStats is a R library that is included as extension in the following software installations:

  • flowViz (extension)

    flowViz is a R library that is included as extension in the following software installations:

  • flowWorkspace (extension)

    flowWorkspace is a R library that is included as extension in the following software installations:

  • FLTK (more details)
    https://www.fltk.org

    FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Flux (more details)
    https://flux-framework.org

    Flux is a flexible framework for resource management, built for your site. The framework consists of a suite of projects, tools, and libraries which may be used to build site-custom resource managers for High Performance Computing centers. Unlike traditional resource managers, Flux can run as a parallel job under most launchers that support MPI, including under Flux itself. This not only makes batch scripts and workflows for Flux portable to other resource managers (just launch Flux as a job), but it also means that batch jobs have all the features of a full resource manager at their disposal, as if they have an entire cluster to themselves.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • flux-core (extension)

    flux-core is a that is included as extension in the following software installations:

  • flux-pmix (extension)

    flux-pmix is a that is included as extension in the following software installations:

  • flux-sched (extension)

    flux-sched is a that is included as extension in the following software installations:

  • Flye (more details)
    https://github.com/fenderglass/Flye

    Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fma (extension)

    fma is a R library that is included as extension in the following software installations:

  • FME (extension)

    FME is a R library that is included as extension in the following software installations:

  • fmri (extension)

    fmri is a R library that is included as extension in the following software installations:

  • FNN (extension)

    FNN is a R library that is included as extension in the following software installations:

  • font-misc-misc (extension)

    font-misc-misc is a that is included as extension in the following software installations:

  • font-util (extension)

    font-util is a that is included as extension in the following software installations:

  • Font::TTF (extension)

    Font::TTF is a Perl module that is included as extension in the following software installations:

  • fontawesome (extension)

    fontawesome is a R library that is included as extension in the following software installations:

  • fontBitstreamVera (extension)

    fontBitstreamVera is a R library that is included as extension in the following software installations:

  • fontconfig (more details)
    https://www.freedesktop.org/wiki/Software/fontconfig

    Fontconfig is a library designed to provide system-wide font configuration, customization and application access.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fontLiberation (extension)

    fontLiberation is a R library that is included as extension in the following software installations:

  • fontquiver (extension)

    fontquiver is a R library that is included as extension in the following software installations:

  • fonttools (extension)

    fonttools is a Python package that is included as extension in the following software installations:

  • fonttools (more details)
    https://python-markdown.github.io

    fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • forcats (extension)

    forcats is a R library that is included as extension in the following software installations:

  • foreach (extension)

    foreach is a R library that is included as extension in the following software installations:

  • forecast (extension)

    forecast is a R library that is included as extension in the following software installations:

  • foreign (extension)

    foreign is a R library that is included as extension in the following software installations:

  • formatR (extension)

    formatR is a R library that is included as extension in the following software installations:

  • Formula (extension)

    Formula is a R library that is included as extension in the following software installations:

  • formula.tools (extension)

    formula.tools is a R library that is included as extension in the following software installations:

  • foss (more details)
    https://docs.easybuild.io/common-toolchains/#common_toolchains_foss, https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain

    GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fossil (extension)

    fossil is a R library that is included as extension in the following software installations:

  • fpc (extension)

    fpc is a R library that is included as extension in the following software installations:

  • fpp (extension)

    fpp is a R library that is included as extension in the following software installations:

  • fracdiff (extension)

    fracdiff is a R library that is included as extension in the following software installations:

  • FragGeneScan (more details)
    https://omics.informatics.indiana.edu/FragGeneScan

    FragGeneScan is an application for finding (fragmented) genes in short reads.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FRASER (extension)

    FRASER is a R library that is included as extension in the following software installations:

  • frbs (extension)

    frbs is a R library that is included as extension in the following software installations:

  • freeglut (more details)
    http://freeglut.sourceforge.net

    freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FreeImage (more details)
    http://freeimage.sourceforge.net

    FreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • freetype (more details)
    https://www.freetype.org

    FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • FreeXL (more details)
    https://www.gaia-gis.it/fossil/freexl/index

    FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • fresh (extension)

    fresh is a R library that is included as extension in the following software installations:

  • FriBidi (more details)
    https://github.com/fribidi/fribidi

    The Free Implementation of the Unicode Bidirectional Algorithm.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • frozenlist (extension)

    frozenlist is a Python package that is included as extension in the following software installations:

  • fs (extension)

    fs is a R library that is included as extension in the following software installations:

  • fsspec (extension)

    fsspec is a Python package that is included as extension in the following software installations:

  • funcsigs (extension)

    funcsigs is a Python package that is included as extension in the following software installations:

  • furrr (extension)

    furrr is a R library that is included as extension in the following software installations:

  • futile.logger (extension)

    futile.logger is a R library that is included as extension in the following software installations:

  • futile.options (extension)

    futile.options is a R library that is included as extension in the following software installations:

  • future (extension)

    future is a Python package that is included as extension in the following software installations:

  • future (extension)

    future is a R library that is included as extension in the following software installations:

  • future.apply (extension)

    future.apply is a R library that is included as extension in the following software installations:

  • g (extension)

    g is a R library that is included as extension in the following software installations:

  • galaxy-tool-util (extension)

    galaxy-tool-util is a Python package that is included as extension in the following software installations:

  • galaxy-util (extension)

    galaxy-util is a Python package that is included as extension in the following software installations:

  • gam (extension)

    gam is a R library that is included as extension in the following software installations:

  • gamlss (extension)

    gamlss is a R library that is included as extension in the following software installations:

  • gamlss.data (extension)

    gamlss.data is a R library that is included as extension in the following software installations:

  • gamlss.dist (extension)

    gamlss.dist is a R library that is included as extension in the following software installations:

  • gamlss.tr (extension)

    gamlss.tr is a R library that is included as extension in the following software installations:

  • gamm4 (extension)

    gamm4 is a R library that is included as extension in the following software installations:

  • gap (extension)

    gap is a R library that is included as extension in the following software installations:

  • gap.datasets (extension)

    gap.datasets is a R library that is included as extension in the following software installations:

  • gapfill (extension)

    gapfill is a R library that is included as extension in the following software installations:

  • gargle (extension)

    gargle is a R library that is included as extension in the following software installations:

  • gast (extension)

    gast is a Python package that is included as extension in the following software installations:

  • GATK (more details)
    https://www.broadinstitute.org/gatk

    The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gaussquad (extension)

    gaussquad is a R library that is included as extension in the following software installations:

  • gawk (more details)
    https://www.gnu.org/software/gawk

    The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Gblocks (more details)
    https://www.biologiaevolutiva.org/jcastresana/Gblocks.html

    Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gbm (extension)

    gbm is a R library that is included as extension in the following software installations:

  • gbRd (extension)

    gbRd is a R library that is included as extension in the following software installations:

  • gc (more details)
    https://hboehm.info/gc

    The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GCC (more details)
    https://gcc.gnu.org

    The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GCCcore (more details)
    https://gcc.gnu.org

    The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gclus (extension)

    gclus is a R library that is included as extension in the following software installations:

  • gcmr (extension)

    gcmr is a R library that is included as extension in the following software installations:

  • gcrma (extension)

    gcrma is a R library that is included as extension in the following software installations:

  • GDAL (more details)
    https://www.gdal.org

    GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gdalUtilities (extension)

    gdalUtilities is a R library that is included as extension in the following software installations:

  • gdalUtils (extension)

    gdalUtils is a R library that is included as extension in the following software installations:

  • gdata (extension)

    gdata is a R library that is included as extension in the following software installations:

  • GDB (more details)
    https://www.gnu.org/software/gdb/gdb.html

    The GNU Project Debugger

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gdistance (extension)

    gdistance is a R library that is included as extension in the following software installations:

  • Gdk-Pixbuf (more details)
    https://docs.gtk.org/gdk-pixbuf

    The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GDRCopy (more details)
    https://github.com/NVIDIA/gdrcopy

    A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gdsfmt (extension)

    gdsfmt is a R library that is included as extension in the following software installations:

  • gdtools (extension)

    gdtools is a R library that is included as extension in the following software installations:

  • gee (extension)

    gee is a R library that is included as extension in the following software installations:

  • geeM (extension)

    geeM is a R library that is included as extension in the following software installations:

  • geepack (extension)

    geepack is a R library that is included as extension in the following software installations:

  • geex (extension)

    geex is a R library that is included as extension in the following software installations:

  • geiger (extension)

    geiger is a R library that is included as extension in the following software installations:

  • genefilter (extension)

    genefilter is a R library that is included as extension in the following software installations:

  • geneLenDataBase (extension)

    geneLenDataBase is a R library that is included as extension in the following software installations:

  • GeneNet (extension)

    GeneNet is a R library that is included as extension in the following software installations:

  • geneplotter (extension)

    geneplotter is a R library that is included as extension in the following software installations:

  • general (extension)

    general is a that is included as extension in the following software installations:

  • generics (extension)

    generics is a R library that is included as extension in the following software installations:

  • GENESIS (extension)

    GENESIS is a R library that is included as extension in the following software installations:

  • gengetopt (more details)
    https://www.gnu.org/software/gengetopt/gengetopt.html

    Gengetopt is a tool to write command line option parsing code for C programs.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GENIE3 (extension)

    GENIE3 is a R library that is included as extension in the following software installations:

  • genomation (extension)

    genomation is a R library that is included as extension in the following software installations:

  • GenomeInfoDb (extension)

    GenomeInfoDb is a R library that is included as extension in the following software installations:

  • GenomeInfoDbData (extension)

    GenomeInfoDbData is a R library that is included as extension in the following software installations:

  • GenomeTools (more details)
    http://genometools.org

    A comprehensive software library for efficient processing of structured genome annotations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GenomicAlignments (extension)

    GenomicAlignments is a R library that is included as extension in the following software installations:

  • GenomicFeatures (extension)

    GenomicFeatures is a R library that is included as extension in the following software installations:

  • GenomicFiles (extension)

    GenomicFiles is a R library that is included as extension in the following software installations:

  • GenomicInteractions (extension)

    GenomicInteractions is a R library that is included as extension in the following software installations:

  • GenomicRanges (extension)

    GenomicRanges is a R library that is included as extension in the following software installations:

  • GenomicScores (extension)

    GenomicScores is a R library that is included as extension in the following software installations:

  • genoPlotR (extension)

    genoPlotR is a R library that is included as extension in the following software installations:

  • GenSA (extension)

    GenSA is a R library that is included as extension in the following software installations:

  • geojson (extension)

    geojson is a R library that is included as extension in the following software installations:

  • geojsonio (extension)

    geojsonio is a R library that is included as extension in the following software installations:

  • geojsonsf (extension)

    geojsonsf is a R library that is included as extension in the following software installations:

  • GEOmap (extension)

    GEOmap is a R library that is included as extension in the following software installations:

  • geometric (extension)

    geometric is a Python package that is included as extension in the following software installations:

  • geometries (extension)

    geometries is a R library that is included as extension in the following software installations:

  • geometry (extension)

    geometry is a R library that is included as extension in the following software installations:

  • geopandas (extension)

    geopandas is a Python package that is included as extension in the following software installations:

  • geopandas (more details)
    https://geopandas.org

    GeoPandas is a project to add support for geographic data to pandas objects. It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and perform geometric operations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GEOquery (extension)

    GEOquery is a R library that is included as extension in the following software installations:

  • GEOS (more details)
    https://trac.osgeo.org/geos

    GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gert (extension)

    gert is a R library that is included as extension in the following software installations:

  • getopt (extension)

    getopt is a R library that is included as extension in the following software installations:

  • Getopt::Long (extension)

    Getopt::Long is a Perl module that is included as extension in the following software installations:

  • Getopt::Long::Descriptive (extension)

    Getopt::Long::Descriptive is a Perl module that is included as extension in the following software installations:

  • GetoptLong (extension)

    GetoptLong is a R library that is included as extension in the following software installations:

  • gfbf (more details)
    (none)

    GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gfonts (extension)

    gfonts is a R library that is included as extension in the following software installations:

  • GGally (extension)

    GGally is a R library that is included as extension in the following software installations:

  • ggbeeswarm (extension)

    ggbeeswarm is a R library that is included as extension in the following software installations:

  • ggbio (extension)

    ggbio is a R library that is included as extension in the following software installations:

  • ggcyto (extension)

    ggcyto is a R library that is included as extension in the following software installations:

  • ggdag (extension)

    ggdag is a R library that is included as extension in the following software installations:

  • ggdendro (extension)

    ggdendro is a R library that is included as extension in the following software installations:

  • ggdist (extension)

    ggdist is a R library that is included as extension in the following software installations:

  • ggExtra (extension)

    ggExtra is a R library that is included as extension in the following software installations:

  • ggfan (extension)

    ggfan is a R library that is included as extension in the following software installations:

  • ggforce (extension)

    ggforce is a R library that is included as extension in the following software installations:

  • ggformula (extension)

    ggformula is a R library that is included as extension in the following software installations:

  • ggfun (extension)

    ggfun is a R library that is included as extension in the following software installations:

  • ggh4x (extension)

    ggh4x is a R library that is included as extension in the following software installations:

  • ggml-cpu (extension)

    ggml-cpu is a that is included as extension in the following software installations:

  • ggnetwork (extension)

    ggnetwork is a R library that is included as extension in the following software installations:

  • ggnewscale (extension)

    ggnewscale is a R library that is included as extension in the following software installations:

  • ggpicrust2 (extension)

    ggpicrust2 is a R library that is included as extension in the following software installations:

  • ggplot2 (extension)

    ggplot2 is a R library that is included as extension in the following software installations:

  • ggplotify (extension)

    ggplotify is a R library that is included as extension in the following software installations:

  • ggpointdensity (extension)

    ggpointdensity is a R library that is included as extension in the following software installations:

  • ggprism (extension)

    ggprism is a R library that is included as extension in the following software installations:

  • ggpubr (extension)

    ggpubr is a R library that is included as extension in the following software installations:

  • ggraph (extension)

    ggraph is a R library that is included as extension in the following software installations:

  • ggrastr (extension)

    ggrastr is a R library that is included as extension in the following software installations:

  • ggrepel (extension)

    ggrepel is a R library that is included as extension in the following software installations:

  • ggridges (extension)

    ggridges is a R library that is included as extension in the following software installations:

  • ggsci (extension)

    ggsci is a R library that is included as extension in the following software installations:

  • ggseqlogo (extension)

    ggseqlogo is a R library that is included as extension in the following software installations:

  • ggsignif (extension)

    ggsignif is a R library that is included as extension in the following software installations:

  • ggstance (extension)

    ggstance is a R library that is included as extension in the following software installations:

  • ggstats (extension)

    ggstats is a R library that is included as extension in the following software installations:

  • ggtangle (extension)

    ggtangle is a R library that is included as extension in the following software installations:

  • ggthemes (extension)

    ggthemes is a R library that is included as extension in the following software installations:

  • ggtree (extension)

    ggtree is a R library that is included as extension in the following software installations:

  • ggvenn (extension)

    ggvenn is a R library that is included as extension in the following software installations:

  • ggvis (extension)

    ggvis is a R library that is included as extension in the following software installations:

  • gh (extension)

    gh is a R library that is included as extension in the following software installations:

  • gh (extension)

    gh is a that is included as extension in the following software installations:

  • Ghostscript (more details)
    https://ghostscript.com

    Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • giflib (more details)
    http://giflib.sourceforge.net

    giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GillespieSSA (extension)

    GillespieSSA is a R library that is included as extension in the following software installations:

  • Ginkgo (more details)
    https://github.com/ginkgo-project/ginkgo

    Ginkgo is a high-performance numerical linear algebra library with a focus on the solution of sparse linear systems. It also has support for popular GPUs (NVIDIA, AMD and Intel) with their native programming models, aiming to maximize the attainable performance. It also has distributed support with MPI and can be used to run solvers and preconditioners on large scale supercomputers. With a focus on sustainable software development, it has comprehensive unit tests, usage examples and continuous integration setups to ensure robustness. It also has been integrated into many popular applications such as MFEM, OpenCARP, deal.ii, OpenFOAM etc.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Git (extension)

    Git is a Perl module that is included as extension in the following software installations:

  • git (more details)
    https://git-scm.com

    Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • git2r (extension)

    git2r is a R library that is included as extension in the following software installations:

  • gitcreds (extension)

    gitcreds is a R library that is included as extension in the following software installations:

  • gitdb (extension)

    gitdb is a Python package that is included as extension in the following software installations:

  • GitPython (extension)

    GitPython is a Python package that is included as extension in the following software installations:

  • GitPython (more details)
    https://gitpython.readthedocs.org

    GitPython is a python library used to interact with Git repositories

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GJRM (extension)

    GJRM is a R library that is included as extension in the following software installations:

  • GL2PS (more details)
    https://www.geuz.org/gl2ps

    GL2PS: an OpenGL to PostScript printing library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GLAD (extension)

    GLAD is a R library that is included as extension in the following software installations:

  • glasso (extension)

    glasso is a R library that is included as extension in the following software installations:

  • gld (extension)

    gld is a R library that is included as extension in the following software installations:

  • glew (more details)
    https://github.com/nigels-com/glew

    The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GLib (more details)
    https://www.gtk.org

    GLib is one of the base libraries of the GTK+ project

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • glib-networking (more details)
    https://gitlab.gnome.org/GNOME/glib-networking

    Network extensions for GLib

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Glimma (extension)

    Glimma is a R library that is included as extension in the following software installations:

  • gllvm (extension)

    gllvm is a R library that is included as extension in the following software installations:

  • glmmML (extension)

    glmmML is a R library that is included as extension in the following software installations:

  • glmmTMB (extension)

    glmmTMB is a R library that is included as extension in the following software installations:

  • glmnet (extension)

    glmnet is a R library that is included as extension in the following software installations:

  • glob2 (extension)

    glob2 is a Python package that is included as extension in the following software installations:

  • GlobalAncova (extension)

    GlobalAncova is a R library that is included as extension in the following software installations:

  • GlobalOptions (extension)

    GlobalOptions is a R library that is included as extension in the following software installations:

  • globals (extension)

    globals is a R library that is included as extension in the following software installations:

  • globaltest (extension)

    globaltest is a R library that is included as extension in the following software installations:

  • GLPK (more details)
    https://www.gnu.org/software/glpk

    The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • glslang-SPIRV (more details)
    https://www.khronos.org/opengles/sdk/tools/Reference-Compiler

    Glslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • glue (extension)

    glue is a R library that is included as extension in the following software installations:

  • gmm (extension)

    gmm is a R library that is included as extension in the following software installations:

  • gmodels (extension)

    gmodels is a R library that is included as extension in the following software installations:

  • GMP (more details)
    https://gmplib.org

    GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gmp (extension)

    gmp is a R library that is included as extension in the following software installations:

  • gmpy2 (more details)
    https://github.com/aleaxit/gmpy

    GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gmsh (more details)
    https://gmsh.info

    Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gmxapi (extension)

    gmxapi is a Python package that is included as extension in the following software installations:

  • gnumeric (extension)

    gnumeric is a R library that is included as extension in the following software installations:

  • gnuplot (more details)
    http://gnuplot.sourceforge.net

    Portable interactive, function plotting utility

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GnuTLS (more details)
    https://www.gnutls.org

    GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GO (extension)

    GO is a Perl module that is included as extension in the following software installations:

  • Go (more details)
    https://www.golang.org

    Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GO.db (extension)

    GO.db is a R library that is included as extension in the following software installations:

  • GO::Utils (extension)

    GO::Utils is a Perl module that is included as extension in the following software installations:

  • GObject-Introspection (more details)
    https://gi.readthedocs.io/en/latest

    GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • goftest (extension)

    goftest is a R library that is included as extension in the following software installations:

  • goldilocks (extension)

    goldilocks is a R library that is included as extension in the following software installations:

  • gomms (extension)

    gomms is a R library that is included as extension in the following software installations:

  • gompi (more details)
    (none)

    GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • google-api-core (extension)

    google-api-core is a Python package that is included as extension in the following software installations:

  • google-auth (extension)

    google-auth is a Python package that is included as extension in the following software installations:

  • google-auth-oauthlib (extension)

    google-auth-oauthlib is a Python package that is included as extension in the following software installations:

  • google-cloud-core (extension)

    google-cloud-core is a Python package that is included as extension in the following software installations:

  • google-cloud-storage (extension)

    google-cloud-storage is a Python package that is included as extension in the following software installations:

  • google-crc32c (extension)

    google-crc32c is a Python package that is included as extension in the following software installations:

  • google-pasta (extension)

    google-pasta is a Python package that is included as extension in the following software installations:

  • google-resumable-media (extension)

    google-resumable-media is a Python package that is included as extension in the following software installations:

  • google_auth (extension)

    google_auth is a Python package that is included as extension in the following software installations:

  • googleapis-common-protos (extension)

    googleapis-common-protos is a Python package that is included as extension in the following software installations:

  • googleapis-python (more details)
    https://googleapis.github.io

    Clients and tools for Google APIs in Python

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • googledrive (extension)

    googledrive is a R library that is included as extension in the following software installations:

  • googlesheets4 (extension)

    googlesheets4 is a R library that is included as extension in the following software installations:

  • googletest (more details)
    https://github.com/google/googletest

    Google's framework for writing C++ tests on a variety of platforms

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GOSemSim (extension)

    GOSemSim is a R library that is included as extension in the following software installations:

  • goseq (extension)

    goseq is a R library that is included as extension in the following software installations:

  • GOstats (extension)

    GOstats is a R library that is included as extension in the following software installations:

  • GOTCHA (more details)
    https://gotcha.readthedocs.io/en/latest

    Gotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gower (extension)

    gower is a R library that is included as extension in the following software installations:

  • GPArotation (extension)

    GPArotation is a R library that is included as extension in the following software installations:

  • gplots (extension)

    gplots is a R library that is included as extension in the following software installations:

  • Graph (extension)

    Graph is a Perl module that is included as extension in the following software installations:

  • graph (extension)

    graph is a R library that is included as extension in the following software installations:

  • Graph::ReadWrite (extension)

    Graph::ReadWrite is a Perl module that is included as extension in the following software installations:

  • Graphene (more details)
    https://ebassi.github.io/graphene

    Graphene is a thin layer of types for graphic libraries

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • graphene (extension)

    graphene is a Python package that is included as extension in the following software installations:

  • GraphicsMagick (more details)
    http://www.graphicsmagick.org

    GraphicsMagick is the swiss army knife of image processing.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • graphite (extension)

    graphite is a R library that is included as extension in the following software installations:

  • graphite2 (more details)
    https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home

    Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • graphlayouts (extension)

    graphlayouts is a R library that is included as extension in the following software installations:

  • graphql-relay (extension)

    graphql-relay is a Python package that is included as extension in the following software installations:

  • graphql_core (extension)

    graphql_core is a Python package that is included as extension in the following software installations:

  • graphql_relay (extension)

    graphql_relay is a Python package that is included as extension in the following software installations:

  • Graphviz (more details)
    https://www.graphviz.org

    Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • graphviz (extension)

    graphviz is a Python package that is included as extension in the following software installations:

  • GRASS (more details)
    https://grass.osgeo.org

    The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Greenlet (more details)
    https://github.com/python-greenlet/greenlet

    The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • greenlet (extension)

    greenlet is a Python package that is included as extension in the following software installations:

  • grf (extension)

    grf is a R library that is included as extension in the following software installations:

  • gridBase (extension)

    gridBase is a R library that is included as extension in the following software installations:

  • GridDataFormats (extension)

    GridDataFormats is a Python package that is included as extension in the following software installations:

  • gridExtra (extension)

    gridExtra is a R library that is included as extension in the following software installations:

  • gridGraphics (extension)

    gridGraphics is a R library that is included as extension in the following software installations:

  • grImport2 (extension)

    grImport2 is a R library that is included as extension in the following software installations:

  • groff (more details)
    https://www.gnu.org/software/groff

    Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GROMACS (more details)
    https://www.gromacs.org

    GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • grpcio (extension)

    grpcio is a Python package that is included as extension in the following software installations:

  • grpcio (more details)
    https://grpc.io

    gRPC is a modern, open source, high-performance remote procedure call (RPC) framework that can run anywhere. gRPC enables client and server applications to communicate transparently, and simplifies the building of connected systems.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • grpreg (extension)

    grpreg is a R library that is included as extension in the following software installations:

  • GSA (extension)

    GSA is a R library that is included as extension in the following software installations:

  • gsalib (extension)

    gsalib is a R library that is included as extension in the following software installations:

  • gsd (extension)

    gsd is a Python package that is included as extension in the following software installations:

  • gsDesign (extension)

    gsDesign is a R library that is included as extension in the following software installations:

  • GSEABase (extension)

    GSEABase is a R library that is included as extension in the following software installations:

  • gsignal (extension)

    gsignal is a R library that is included as extension in the following software installations:

  • GSL (more details)
    https://www.gnu.org/software/gsl

    The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gsl (extension)

    gsl is a R library that is included as extension in the following software installations:

  • gsmoothr (extension)

    gsmoothr is a R library that is included as extension in the following software installations:

  • gson (extension)

    gson is a R library that is included as extension in the following software installations:

  • gss (extension)

    gss is a R library that is included as extension in the following software installations:

  • GST-plugins-bad (more details)
    https://gstreamer.freedesktop.org

    GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GST-plugins-base (more details)
    https://gstreamer.freedesktop.org

    GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GST-plugins-good (more details)
    https://gstreamer.freedesktop.org

    GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GStreamer (more details)
    https://gstreamer.freedesktop.org

    GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gsubfn (extension)

    gsubfn is a R library that is included as extension in the following software installations:

  • GSVA (extension)

    GSVA is a R library that is included as extension in the following software installations:

  • gsw (extension)

    gsw is a R library that is included as extension in the following software installations:

  • gt (extension)

    gt is a R library that is included as extension in the following software installations:

  • gtable (extension)

    gtable is a R library that is included as extension in the following software installations:

  • GTK (extension)

    GTK is a that is included as extension in the following software installations:

  • GTK+ (extension)

    GTK+ is a that is included as extension in the following software installations:

  • gtk-doc (more details)
    https://gitlab.gnome.org/GNOME/gtk-doc

    Documentation tool for public library API

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gtk-layer-shell (more details)
    https://github.com/wmww/gtk-layer-shell

    A library to create panels and other desktop components for Wayland using the Layer Shell protocol. GTK3 version.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GTK3 (more details)
    https://developer.gnome.org/gtk3/stable

    GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • GTK4 (more details)
    https://docs.gtk.org/gtk4

    GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gtools (extension)

    gtools is a R library that is included as extension in the following software installations:

  • GTS (more details)
    http://gts.sourceforge.net

    GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gtsummary (extension)

    gtsummary is a R library that is included as extension in the following software installations:

  • Guile (more details)
    https://www.gnu.org/software/guile

    Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • gunicorn (extension)

    gunicorn is a Python package that is included as extension in the following software installations:

  • GUTS (extension)

    GUTS is a R library that is included as extension in the following software installations:

  • Gviz (extension)

    Gviz is a R library that is included as extension in the following software installations:

  • gviz-api (extension)

    gviz-api is a Python package that is included as extension in the following software installations:

  • GWASExactHW (extension)

    GWASExactHW is a R library that is included as extension in the following software installations:

  • GWASTools (extension)

    GWASTools is a R library that is included as extension in the following software installations:

  • gWidgets2 (extension)

    gWidgets2 is a R library that is included as extension in the following software installations:

  • gWidgets2tcltk (extension)

    gWidgets2tcltk is a R library that is included as extension in the following software installations:

  • GxEScanR (extension)

    GxEScanR is a R library that is included as extension in the following software installations:

  • gzip (more details)
    https://www.gnu.org/software/gzip

    gzip (GNU zip) is a popular data compression program as a replacement for compress

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • h11 (extension)

    h11 is a Python package that is included as extension in the following software installations:

  • h2o (extension)

    h2o is a R library that is included as extension in the following software installations:

  • h5netcdf (extension)

    h5netcdf is a Python package that is included as extension in the following software installations:

  • h5netcdf (more details)
    https://h5netcdf.org

    A Python interface for the netCDF4 file-format that reads and writes local or remote HDF5 files directly via h5py or h5pyd, without relying on the Unidata netCDF library.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • h5py (more details)
    https://www.h5py.org

    HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hahmmr (extension)

    hahmmr is a R library that is included as extension in the following software installations:

  • hal9001 (extension)

    hal9001 is a R library that is included as extension in the following software installations:

  • haldensify (extension)

    haldensify is a R library that is included as extension in the following software installations:

  • hardhat (extension)

    hardhat is a R library that is included as extension in the following software installations:

  • HarfBuzz (more details)
    https://www.freedesktop.org/wiki/Software/HarfBuzz

    HarfBuzz is an OpenType text shaping engine.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • harmony (extension)

    harmony is a R library that is included as extension in the following software installations:

  • hash (extension)

    hash is a R library that is included as extension in the following software installations:

  • Hash::Merge (extension)

    Hash::Merge is a Perl module that is included as extension in the following software installations:

  • Hash::Objectify (extension)

    Hash::Objectify is a Perl module that is included as extension in the following software installations:

  • hatch-docstring-description (extension)

    hatch-docstring-description is a Python package that is included as extension in the following software installations:

  • hatch-fancy-pypi-readme (extension)

    hatch-fancy-pypi-readme is a Python package that is included as extension in the following software installations:

  • hatch-jupyter-builder (more details)
    https://hatch-jupyter-builder.readthedocs.io

    Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hatch-requirements-txt (extension)

    hatch-requirements-txt is a Python package that is included as extension in the following software installations:

  • hatch-vcs (extension)

    hatch-vcs is a Python package that is included as extension in the following software installations:

  • hatch_fancy_pypi_readme (extension)

    hatch_fancy_pypi_readme is a Python package that is included as extension in the following software installations:

  • hatch_jupyter_builder (extension)

    hatch_jupyter_builder is a Python package that is included as extension in the following software installations:

  • hatch_nodejs_version (extension)

    hatch_nodejs_version is a Python package that is included as extension in the following software installations:

  • hatch_vcs (extension)

    hatch_vcs is a Python package that is included as extension in the following software installations:

  • hatchling (extension)

    hatchling is a Python package that is included as extension in the following software installations:

  • hatchling (more details)
    https://hatch.pypa.io

    Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • haven (extension)

    haven is a R library that is included as extension in the following software installations:

  • HDBSCAN (more details)
    http://hdbscan.readthedocs.io/en/latest

    The hdbscan library is a suite of tools to use unsupervised learning to find clusters, or dense regions, of a dataset. The primary algorithm is HDBSCAN* as proposed by Campello, Moulavi, and Sander. The library provides a high performance implementation of this algorithm, along with tools for analysing the resulting clustering.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • HDF (more details)
    https://www.hdfgroup.org/products/hdf4, https://support.hdfgroup.org/products/hdf4

    HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • HDF5 (more details)
    https://portal.hdfgroup.org/display/support

    HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • HDF5Array (extension)

    HDF5Array is a R library that is included as extension in the following software installations:

  • hdf5r (extension)

    hdf5r is a R library that is included as extension in the following software installations:

  • hdm (extension)

    hdm is a R library that is included as extension in the following software installations:

  • hdmedians (extension)

    hdmedians is a Python package that is included as extension in the following software installations:

  • HDO.db (extension)

    HDO.db is a R library that is included as extension in the following software installations:

  • hdrcde (extension)

    hdrcde is a R library that is included as extension in the following software installations:

  • Heap (extension)

    Heap is a Perl module that is included as extension in the following software installations:

  • HeapDict (extension)

    HeapDict is a Python package that is included as extension in the following software installations:

  • heatmap3 (extension)

    heatmap3 is a R library that is included as extension in the following software installations:

  • heatmaply (extension)

    heatmaply is a R library that is included as extension in the following software installations:

  • HeFFTe (more details)
    https://icl.utk.edu/fft

    Highly Efficient FFT for Exascale (HeFFTe) library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • HepMC3 (more details)
    http://hepmc.web.cern.ch/hepmc

    HepMC is a standard for storing Monte Carlo event data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • here (extension)

    here is a R library that is included as extension in the following software installations:

  • hexbin (extension)

    hexbin is a R library that is included as extension in the following software installations:

  • HGNChelper (extension)

    HGNChelper is a R library that is included as extension in the following software installations:

  • hgu133plus2.db (extension)

    hgu133plus2.db is a R library that is included as extension in the following software installations:

  • hiAnnotator (extension)

    hiAnnotator is a R library that is included as extension in the following software installations:

  • hic-straw (more details)
    https://github.com/aidenlab/straw

    Straw is a library which allows rapid streaming of contact data from .hic files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • HiCBricks (extension)

    HiCBricks is a R library that is included as extension in the following software installations:

  • HiCcompare (extension)

    HiCcompare is a R library that is included as extension in the following software installations:

  • hicolor-icon-theme (extension)

    hicolor-icon-theme is a that is included as extension in the following software installations:

  • HiddenMarkov (extension)

    HiddenMarkov is a R library that is included as extension in the following software installations:

  • highline (extension)

    highline is a that is included as extension in the following software installations:

  • highr (extension)

    highr is a R library that is included as extension in the following software installations:

  • Highway (more details)
    https://github.com/google/highway

    Highway is a C++ library for SIMD (Single Instruction, Multiple Data), i.e. applying the same operation to 'lanes'.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hiredis (more details)
    https://github.com/redis/hiredis

    Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hits (extension)

    hits is a Python package that is included as extension in the following software installations:

  • Hmisc (extension)

    Hmisc is a R library that is included as extension in the following software installations:

  • HMMcopy (extension)

    HMMcopy is a R library that is included as extension in the following software installations:

  • HMMER (more details)
    http://hmmer.org

    HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hms (extension)

    hms is a R library that is included as extension in the following software installations:

  • Hmsc (extension)

    Hmsc is a R library that is included as extension in the following software installations:

  • Homo.sapiens (extension)

    Homo.sapiens is a R library that is included as extension in the following software installations:

  • Hook::LexWrap (extension)

    Hook::LexWrap is a Perl module that is included as extension in the following software installations:

  • HPL (more details)
    https://www.netlib.org/benchmark/hpl

    HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • html5lib (extension)

    html5lib is a Python package that is included as extension in the following software installations:

  • HTML::Entities::Interpolate (extension)

    HTML::Entities::Interpolate is a Perl module that is included as extension in the following software installations:

  • HTML::Form (extension)

    HTML::Form is a Perl module that is included as extension in the following software installations:

  • HTML::Parser (extension)

    HTML::Parser is a Perl module that is included as extension in the following software installations:

  • HTML::Tagset (extension)

    HTML::Tagset is a Perl module that is included as extension in the following software installations:

  • HTML::Template (extension)

    HTML::Template is a Perl module that is included as extension in the following software installations:

  • HTML::Tree (extension)

    HTML::Tree is a Perl module that is included as extension in the following software installations:

  • htmlTable (extension)

    htmlTable is a R library that is included as extension in the following software installations:

  • htmltools (extension)

    htmltools is a R library that is included as extension in the following software installations:

  • htmlwidgets (extension)

    htmlwidgets is a R library that is included as extension in the following software installations:

  • HTSlib (more details)
    https://www.htslib.org

    A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • HTTP::CookieJar (extension)

    HTTP::CookieJar is a Perl module that is included as extension in the following software installations:

  • HTTP::Cookies (extension)

    HTTP::Cookies is a Perl module that is included as extension in the following software installations:

  • HTTP::Daemon (extension)

    HTTP::Daemon is a Perl module that is included as extension in the following software installations:

  • HTTP::Date (extension)

    HTTP::Date is a Perl module that is included as extension in the following software installations:

  • HTTP::Message (extension)

    HTTP::Message is a Perl module that is included as extension in the following software installations:

  • HTTP::Negotiate (extension)

    HTTP::Negotiate is a Perl module that is included as extension in the following software installations:

  • HTTP::Request (extension)

    HTTP::Request is a Perl module that is included as extension in the following software installations:

  • HTTP::Tiny (extension)

    HTTP::Tiny is a Perl module that is included as extension in the following software installations:

  • httpcode (extension)

    httpcode is a R library that is included as extension in the following software installations:

  • httpcore (extension)

    httpcore is a Python package that is included as extension in the following software installations:

  • httpuv (extension)

    httpuv is a R library that is included as extension in the following software installations:

  • httpx (extension)

    httpx is a Python package that is included as extension in the following software installations:

  • httr (extension)

    httr is a R library that is included as extension in the following software installations:

  • httr2 (extension)

    httr2 is a R library that is included as extension in the following software installations:

  • huge (extension)

    huge is a R library that is included as extension in the following software installations:

  • humanfriendly (extension)

    humanfriendly is a Python package that is included as extension in the following software installations:

  • hunspell (extension)

    hunspell is a R library that is included as extension in the following software installations:

  • hunspell (more details)
    https://hunspell.github.io

    Hunspell is a spell checker and morphological analyzer library and program designed for languages with rich morphology and complex word compounding or character encoding.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hwdata (more details)
    https://github.com/vcrhonek/hwdata

    hwdata contains various hardware identification and configuration data, such as the pci.ids and usb.ids databases.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hwloc (more details)
    https://www.open-mpi.org/projects/hwloc

    The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • hwriter (extension)

    hwriter is a R library that is included as extension in the following software installations:

  • HWxtest (extension)

    HWxtest is a R library that is included as extension in the following software installations:

  • hypergeo (extension)

    hypergeo is a R library that is included as extension in the following software installations:

  • hypothesis (more details)
    https://github.com/HypothesisWorks/hypothesis

    Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Hypre (more details)
    https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods

    Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • i18n (extension)

    i18n is a that is included as extension in the following software installations:

  • ica (extension)

    ica is a R library that is included as extension in the following software installations:

  • iceauth (extension)

    iceauth is a that is included as extension in the following software installations:

  • ICU (more details)
    https://icu.unicode.org

    ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • identify (extension)

    identify is a Python package that is included as extension in the following software installations:

  • IDG (more details)
    https://idg.readthedocs.io

    Image Domain Gridding (IDG) is a fast method for convolutional resampling (gridding/degridding) of radio astronomical data (visibilities). Direction dependent effects (DDEs) or A-tems can be applied in the gridding process. The algorithm is described in "Image Domain Gridding: a fast method for convolutional resampling of visibilities", Van der Tol (2018). The implementation is described in "Radio-astronomical imaging on graphics processors", Veenboer (2020). Please cite these papers in publications using IDG.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • idna (extension)

    idna is a Python package that is included as extension in the following software installations:

  • IDPmisc (extension)

    IDPmisc is a R library that is included as extension in the following software installations:

  • idr (extension)

    idr is a R library that is included as extension in the following software installations:

  • ids (extension)

    ids is a R library that is included as extension in the following software installations:

  • ie2misc (extension)

    ie2misc is a R library that is included as extension in the following software installations:

  • if (extension)

    if is a Perl module that is included as extension in the following software installations:

  • igraph (extension)

    igraph is a R library that is included as extension in the following software installations:

  • IHW (extension)

    IHW is a R library that is included as extension in the following software installations:

  • IlluminaHumanMethylation450kanno.ilmn12.hg19 (extension)

    IlluminaHumanMethylation450kanno.ilmn12.hg19 is a R library that is included as extension in the following software installations:

  • IlluminaHumanMethylation450kmanifest (extension)

    IlluminaHumanMethylation450kmanifest is a R library that is included as extension in the following software installations:

  • IlluminaHumanMethylationEPICanno.ilm10b2.hg19 (extension)

    IlluminaHumanMethylationEPICanno.ilm10b2.hg19 is a R library that is included as extension in the following software installations:

  • IlluminaHumanMethylationEPICanno.ilm10b4.hg19 (extension)

    IlluminaHumanMethylationEPICanno.ilm10b4.hg19 is a R library that is included as extension in the following software installations:

  • IlluminaHumanMethylationEPICmanifest (extension)

    IlluminaHumanMethylationEPICmanifest is a R library that is included as extension in the following software installations:

  • IlluminaHumanMethylationEPICv2anno.20a1.hg38 (extension)

    IlluminaHumanMethylationEPICv2anno.20a1.hg38 is a R library that is included as extension in the following software installations:

  • IlluminaHumanMethylationEPICv2manifest (extension)

    IlluminaHumanMethylationEPICv2manifest is a R library that is included as extension in the following software installations:

  • illuminaio (extension)

    illuminaio is a R library that is included as extension in the following software installations:

  • Ima::DBI (extension)

    Ima::DBI is a Perl module that is included as extension in the following software installations:

  • image.binarization (extension)

    image.binarization is a R library that is included as extension in the following software installations:

  • ImageMagick (more details)
    https://www.imagemagick.org

    ImageMagick is a software suite to create, edit, compose, or convert bitmap images

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • imager (extension)

    imager is a R library that is included as extension in the following software installations:

  • imagerExtra (extension)

    imagerExtra is a R library that is included as extension in the following software installations:

  • imagesize (extension)

    imagesize is a Python package that is included as extension in the following software installations:

  • Imath (more details)
    https://imath.readthedocs.io/en/latest

    Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Imlib2 (more details)
    https://docs.enlightenment.org/api/imlib2/html

    This is the Imlib 2 library - a library that does image file loading and saving as well as rendering, manipulation, arbitrary polygon support, etc. It does ALL of these operations FAST. Imlib2 also tries to be highly intelligent about doing them, so writing naive programs can be done easily, without sacrificing speed.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • immutables (extension)

    immutables is a Python package that is included as extension in the following software installations:

  • Import::Into (extension)

    Import::Into is a Perl module that is included as extension in the following software installations:

  • Importer (extension)

    Importer is a Perl module that is included as extension in the following software installations:

  • importlib-metadata (extension)

    importlib-metadata is a Python package that is included as extension in the following software installations:

  • importlib-resources (extension)

    importlib-resources is a Python package that is included as extension in the following software installations:

  • importlib_metadata (extension)

    importlib_metadata is a Python package that is included as extension in the following software installations:

  • importlib_resources (extension)

    importlib_resources is a Python package that is included as extension in the following software installations:

  • impute (extension)

    impute is a R library that is included as extension in the following software installations:

  • ineq (extension)

    ineq is a R library that is included as extension in the following software installations:

  • influenceR (extension)

    influenceR is a R library that is included as extension in the following software installations:

  • infotheo (extension)

    infotheo is a R library that is included as extension in the following software installations:

  • ini (extension)

    ini is a R library that is included as extension in the following software installations:

  • iniconfig (extension)

    iniconfig is a Python package that is included as extension in the following software installations:

  • Inline (extension)

    Inline is a Perl module that is included as extension in the following software installations:

  • inline (extension)

    inline is a R library that is included as extension in the following software installations:

  • insight (extension)

    insight is a R library that is included as extension in the following software installations:

  • installer (extension)

    installer is a Python package that is included as extension in the following software installations:

  • InteractionSet (extension)

    InteractionSet is a R library that is included as extension in the following software installations:

  • interactiveDisplayBase (extension)

    interactiveDisplayBase is a R library that is included as extension in the following software installations:

  • intergraph (extension)

    intergraph is a R library that is included as extension in the following software installations:

  • interp (extension)

    interp is a R library that is included as extension in the following software installations:

  • interpretR (extension)

    interpretR is a R library that is included as extension in the following software installations:

  • intervals (extension)

    intervals is a R library that is included as extension in the following software installations:

  • intervaltree (extension)

    intervaltree is a Python package that is included as extension in the following software installations:

  • intreehooks (extension)

    intreehooks is a Python package that is included as extension in the following software installations:

  • intrinsicDimension (extension)

    intrinsicDimension is a R library that is included as extension in the following software installations:

  • inum (extension)

    inum is a R library that is included as extension in the following software installations:

  • io (extension)

    io is a that is included as extension in the following software installations:

  • IO::Compress::Zip (extension)

    IO::Compress::Zip is a Perl module that is included as extension in the following software installations:

  • IO::File (extension)

    IO::File is a Perl module that is included as extension in the following software installations:

  • IO::HTML (extension)

    IO::HTML is a Perl module that is included as extension in the following software installations:

  • IO::Socket::SSL (extension)

    IO::Socket::SSL is a Perl module that is included as extension in the following software installations:

  • IO::String (extension)

    IO::String is a Perl module that is included as extension in the following software installations:

  • IO::Stringy (extension)

    IO::Stringy is a Perl module that is included as extension in the following software installations:

  • IO::TieCombine (extension)

    IO::TieCombine is a Perl module that is included as extension in the following software installations:

  • IO::Tty (extension)

    IO::Tty is a Perl module that is included as extension in the following software installations:

  • ipaddress (extension)

    ipaddress is a Python package that is included as extension in the following software installations:

  • IPC::Cmd (extension)

    IPC::Cmd is a Perl module that is included as extension in the following software installations:

  • IPC::Run (extension)

    IPC::Run is a Perl module that is included as extension in the following software installations:

  • IPC::Run3 (extension)

    IPC::Run3 is a Perl module that is included as extension in the following software installations:

  • IPC::System::Simple (extension)

    IPC::System::Simple is a Perl module that is included as extension in the following software installations:

  • ipred (extension)

    ipred is a R library that is included as extension in the following software installations:

  • ipykernel (extension)

    ipykernel is a Python package that is included as extension in the following software installations:

  • ipympl (extension)

    ipympl is a Python package that is included as extension in the following software installations:

  • ipympl (more details)
    https://matplotlib.org/ipympl

    Leveraging the Jupyter interactive widgets framework, ipympl enables the interactive features of matplotlib in the Jupyter notebook and in JupyterLab. Besides, the figure canvas element is a proper Jupyter interactive widget which can be positioned in interactive widget layouts.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ipython (extension)

    ipython is a Python package that is included as extension in the following software installations:

  • IPython (more details)
    https://ipython.org/index.html

    IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ipython_genutils (extension)

    ipython_genutils is a Python package that is included as extension in the following software installations:

  • ipython_pygments_lexers (extension)

    ipython_pygments_lexers is a Python package that is included as extension in the following software installations:

  • ipywidgets (extension)

    ipywidgets is a Python package that is included as extension in the following software installations:

  • IQ-TREE (more details)
    http://www.iqtree.org

    Efficient phylogenomic software by maximum likelihood

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • irace (extension)

    irace is a R library that is included as extension in the following software installations:

  • IRanges (extension)

    IRanges is a R library that is included as extension in the following software installations:

  • irlba (extension)

    irlba is a R library that is included as extension in the following software installations:

  • ISA-L (more details)
    https://github.com/intel/isa-l

    Intelligent Storage Acceleration Library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ISL (more details)
    https://libisl.sourceforge.io

    isl is a library for manipulating sets and relations of integer points bounded by linear constraints.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ismev (extension)

    ismev is a R library that is included as extension in the following software installations:

  • Iso (extension)

    Iso is a R library that is included as extension in the following software installations:

  • isoband (extension)

    isoband is a R library that is included as extension in the following software installations:

  • ISOcodes (extension)

    ISOcodes is a R library that is included as extension in the following software installations:

  • ISOweek (extension)

    ISOweek is a R library that is included as extension in the following software installations:

  • isva (extension)

    isva is a R library that is included as extension in the following software installations:

  • iterators (extension)

    iterators is a R library that is included as extension in the following software installations:

  • itertools (extension)

    itertools is a R library that is included as extension in the following software installations:

  • itolapi (extension)

    itolapi is a Python package that is included as extension in the following software installations:

  • itsdangerous (extension)

    itsdangerous is a Python package that is included as extension in the following software installations:

  • ITSTool (more details)
    http://itstool.org

    ITS Tool allows you to translate your XML documents with PO files

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • JADE (extension)

    JADE is a R library that is included as extension in the following software installations:

  • janeaustenr (extension)

    janeaustenr is a R library that is included as extension in the following software installations:

  • Jansson (more details)
    https://www.digip.org/jansson

    Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jaraco.classes (extension)

    jaraco.classes is a Python package that is included as extension in the following software installations:

  • jaraco.context (extension)

    jaraco.context is a Python package that is included as extension in the following software installations:

  • jaraco.functools (extension)

    jaraco.functools is a Python package that is included as extension in the following software installations:

  • JASPAR2020 (extension)

    JASPAR2020 is a R library that is included as extension in the following software installations:

  • JasPer (more details)
    https://www.ece.uvic.ca/~frodo/jasper

    The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Java (more details)
    https://openjdk.org, http://openjdk.java.net

    Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jbigkit (more details)
    https://www.cl.cam.ac.uk/~mgk25/jbigkit

    JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • JBTools (extension)

    JBTools is a R library that is included as extension in the following software installations:

  • jedi (extension)

    jedi is a Python package that is included as extension in the following software installations:

  • jedi (more details)
    https://github.com/davidhalter/jedi

    Jedi - an awesome autocompletion, static analysis and refactoring library for Python.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jeepney (extension)

    jeepney is a Python package that is included as extension in the following software installations:

  • jemalloc (more details)
    http://jemalloc.net

    jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jgmenu (more details)
    https://jgmenu.github.io

    jgmenu is simple, independent and contemporary-looking X11 menu, designed for scripting, modding and tweaking.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jiebaR (extension)

    jiebaR is a R library that is included as extension in the following software installations:

  • jiebaRD (extension)

    jiebaRD is a R library that is included as extension in the following software installations:

  • Jinja2 (extension)

    Jinja2 is a Python package that is included as extension in the following software installations:

  • jmespath (extension)

    jmespath is a Python package that is included as extension in the following software installations:

  • joblib (extension)

    joblib is a Python package that is included as extension in the following software installations:

  • jomo (extension)

    jomo is a R library that is included as extension in the following software installations:

  • jpeg (extension)

    jpeg is a R library that is included as extension in the following software installations:

  • jq (more details)
    https://jqlang.org, https://stedolan.github.io/jq

    jq is a lightweight and flexible command-line JSON processor.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jqr (extension)

    jqr is a R library that is included as extension in the following software installations:

  • jquerylib (extension)

    jquerylib is a R library that is included as extension in the following software installations:

  • JSON (extension)

    JSON is a Perl module that is included as extension in the following software installations:

  • json (extension)

    json is a that is included as extension in the following software installations:

  • json-c (more details)
    https://github.com/json-c/json-c

    JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • json-fortran (more details)
    https://github.com/jacobwilliams/json-fortran

    JSON-Fortran: A Modern Fortran JSON API

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • json5 (extension)

    json5 is a Python package that is included as extension in the following software installations:

  • JSON::MaybeXS (extension)

    JSON::MaybeXS is a Perl module that is included as extension in the following software installations:

  • JSON::XS (extension)

    JSON::XS is a Perl module that is included as extension in the following software installations:

  • JsonCpp (more details)
    https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html

    JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jsonify (extension)

    jsonify is a R library that is included as extension in the following software installations:

  • jsonlite (extension)

    jsonlite is a R library that is included as extension in the following software installations:

  • jsonschema (extension)

    jsonschema is a Python package that is included as extension in the following software installations:

  • jsonschema-specifications (extension)

    jsonschema-specifications is a Python package that is included as extension in the following software installations:

  • jsonschema_specifications (extension)

    jsonschema_specifications is a Python package that is included as extension in the following software installations:

  • jstable (extension)

    jstable is a R library that is included as extension in the following software installations:

  • Judy (more details)
    http://judy.sourceforge.net

    A C library that implements a dynamic array.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • juicyjuice (extension)

    juicyjuice is a R library that is included as extension in the following software installations:

  • jupyter-core (extension)

    jupyter-core is a Python package that is included as extension in the following software installations:

  • jupyter-lsp (extension)

    jupyter-lsp is a Python package that is included as extension in the following software installations:

  • jupyter-server (more details)
    https://jupyter.org

    The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jupyter_client (extension)

    jupyter_client is a Python package that is included as extension in the following software installations:

  • jupyter_core (extension)

    jupyter_core is a Python package that is included as extension in the following software installations:

  • jupyter_events (extension)

    jupyter_events is a Python package that is included as extension in the following software installations:

  • jupyter_packaging (extension)

    jupyter_packaging is a Python package that is included as extension in the following software installations:

  • jupyter_server (extension)

    jupyter_server is a Python package that is included as extension in the following software installations:

  • jupyter_server_terminals (extension)

    jupyter_server_terminals is a Python package that is included as extension in the following software installations:

  • jupyterlab (extension)

    jupyterlab is a Python package that is included as extension in the following software installations:

  • JupyterLab (more details)
    https://jupyter.org

    JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jupyterlab_pygments (extension)

    jupyterlab_pygments is a Python package that is included as extension in the following software installations:

  • jupyterlab_server (extension)

    jupyterlab_server is a Python package that is included as extension in the following software installations:

  • jupyterlab_widgets (extension)

    jupyterlab_widgets is a Python package that is included as extension in the following software installations:

  • jupyterlmod (extension)

    jupyterlmod is a Python package that is included as extension in the following software installations:

  • jupyterlmod (more details)
    https://github.com/cmd-ntrf/jupyter-lmod

    Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • JupyterNotebook (more details)
    https://jupyter.org

    The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • jwcrypto (extension)

    jwcrypto is a Python package that is included as extension in the following software installations:

  • kableExtra (extension)

    kableExtra is a R library that is included as extension in the following software installations:

  • KaHIP (more details)
    https://kahip.github.io

    The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • kde1d (extension)

    kde1d is a R library that is included as extension in the following software installations:

  • kedd (extension)

    kedd is a R library that is included as extension in the following software installations:

  • KEGGgraph (extension)

    KEGGgraph is a R library that is included as extension in the following software installations:

  • KEGGREST (extension)

    KEGGREST is a R library that is included as extension in the following software installations:

  • keras (extension)

    keras is a Python package that is included as extension in the following software installations:

  • kernlab (extension)

    kernlab is a R library that is included as extension in the following software installations:

  • KernSmooth (extension)

    KernSmooth is a R library that is included as extension in the following software installations:

  • keyring (extension)

    keyring is a Python package that is included as extension in the following software installations:

  • keyrings.alt (extension)

    keyrings.alt is a Python package that is included as extension in the following software installations:

  • kim-api (more details)
    https://openkim.org

    Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • kinship2 (extension)

    kinship2 is a R library that is included as extension in the following software installations:

  • kiwipy (extension)

    kiwipy is a Python package that is included as extension in the following software installations:

  • kiwisolver (extension)

    kiwisolver is a Python package that is included as extension in the following software installations:

  • klaR (extension)

    klaR is a R library that is included as extension in the following software installations:

  • knitr (extension)

    knitr is a R library that is included as extension in the following software installations:

  • KODAMA (extension)

    KODAMA is a R library that is included as extension in the following software installations:

  • kohonen (extension)

    kohonen is a R library that is included as extension in the following software installations:

  • KronaTools (more details)
    https://github.com/marbl/Krona/wiki/KronaTools

    Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ks (extension)

    ks is a R library that is included as extension in the following software installations:

  • labdsv (extension)

    labdsv is a R library that is included as extension in the following software installations:

  • labeling (extension)

    labeling is a R library that is included as extension in the following software installations:

  • labelled (extension)

    labelled is a R library that is included as extension in the following software installations:

  • labwc (extension)

    labwc is a that is included as extension in the following software installations:

  • labwc (more details)
    https://labwc.github.io

    Labwc is a wlroots-based window-stacking compositor for Wayland, inspired by Openbox.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • laeken (extension)

    laeken is a R library that is included as extension in the following software installations:

  • lambda.r (extension)

    lambda.r is a R library that is included as extension in the following software installations:

  • LAME (more details)
    http://lame.sourceforge.net

    LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • LAMMPS (more details)
    https://www.lammps.org

    LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • LAPACK (extension)

    LAPACK is a that is included as extension in the following software installations:

  • LaplacesDemon (extension)

    LaplacesDemon is a R library that is included as extension in the following software installations:

  • lars (extension)

    lars is a R library that is included as extension in the following software installations:

  • lassosum (extension)

    lassosum is a R library that is included as extension in the following software installations:

  • lat_lon_parser (extension)

    lat_lon_parser is a Python package that is included as extension in the following software installations:

  • later (extension)

    later is a R library that is included as extension in the following software installations:

  • latexcodec (extension)

    latexcodec is a Python package that is included as extension in the following software installations:

  • lattice (extension)

    lattice is a R library that is included as extension in the following software installations:

  • latticeExtra (extension)

    latticeExtra is a R library that is included as extension in the following software installations:

  • launchy (extension)

    launchy is a that is included as extension in the following software installations:

  • lava (extension)

    lava is a R library that is included as extension in the following software installations:

  • lavaan (extension)

    lavaan is a R library that is included as extension in the following software installations:

  • lazy (extension)

    lazy is a R library that is included as extension in the following software installations:

  • lazy_loader (extension)

    lazy_loader is a Python package that is included as extension in the following software installations:

  • lazyeval (extension)

    lazyeval is a R library that is included as extension in the following software installations:

  • LCFdata (extension)

    LCFdata is a R library that is included as extension in the following software installations:

  • lda (extension)

    lda is a R library that is included as extension in the following software installations:

  • ldbounds (extension)

    ldbounds is a R library that is included as extension in the following software installations:

  • LEA (extension)

    LEA is a R library that is included as extension in the following software installations:

  • leafem (extension)

    leafem is a R library that is included as extension in the following software installations:

  • leaflet (extension)

    leaflet is a R library that is included as extension in the following software installations:

  • leaflet.providers (extension)

    leaflet.providers is a R library that is included as extension in the following software installations:

  • leafsync (extension)

    leafsync is a R library that is included as extension in the following software installations:

  • leaps (extension)

    leaps is a R library that is included as extension in the following software installations:

  • LearnBayes (extension)

    LearnBayes is a R library that is included as extension in the following software installations:

  • lefser (extension)

    lefser is a R library that is included as extension in the following software installations:

  • legacy_api_wrap (extension)

    legacy_api_wrap is a Python package that is included as extension in the following software installations:

  • leiden (extension)

    leiden is a R library that is included as extension in the following software installations:

  • LERC (more details)
    https://github.com/Esri/lerc

    LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Levenshtein (extension)

    Levenshtein is a Python package that is included as extension in the following software installations:

  • lfoss (more details)
    https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain

    GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • LHAPDF (more details)
    http://lhapdf.hepforge.org

    Les Houches Parton Density Function LHAPDF is the standard tool for evaluating parton distribution functions (PDFs) in high-energy physics.

    Available in EESSI versions:
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lhs (extension)

    lhs is a R library that is included as extension in the following software installations:

  • liac-arff (extension)

    liac-arff is a Python package that is included as extension in the following software installations:

  • libaec (more details)
    https://gitlab.dkrz.de/k202009/libaec

    Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libaio (more details)
    https://pagure.io/libaio

    Asynchronous input/output library that uses the kernels native interface.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libaom (more details)
    https://aomedia.googlesource.com/aom

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libarchive (more details)
    https://www.libarchive.org

    Multi-format archive and compression library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libavif (more details)
    https://github.com/AOMediaCodec/libavif

    This library aims to be a friendly, portable C implementation of the AV1 Image File Format, as described here: https://aomediacodec.github.io/av1-avif/

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libcerf (more details)
    https://jugit.fz-juelich.de/mlz/libcerf

    libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libcint (more details)
    https://github.com/sunqm/libcint

    libcint is an open source library for analytical Gaussian integrals.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libclc (more details)
    https://libclc.llvm.org

    libclc is an open source, BSD/MIT dual licensed implementation of the library requirements of the OpenCL C programming language, as specified by the OpenCL 1.1 Specification.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libcoin (extension)

    libcoin is a R library that is included as extension in the following software installations:

  • libconfig (more details)
    https://hyperrealm.github.io/libconfig

    Libconfig is a simple library for processing structured configuration files

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libcroco (more details)
    https://gitlab.gnome.org/Archive/libcroco

    Libcroco is a standalone css2 parsing and manipulation library.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libdap (more details)
    https://www.opendap.org/software/libdap

    A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libde265 (more details)
    https://github.com/strukturag/libde265

    libde265 is an open source implementation of the h.265 video codec

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libdeflate (more details)
    https://github.com/ebiggers/libdeflate

    Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libdisplay-info (more details)
    https://gitlab.freedesktop.org/emersion/libdisplay-info

    EDID and DisplayID library

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libdmx (extension)

    libdmx is a that is included as extension in the following software installations:

  • libdrm (more details)
    https://dri.freedesktop.org

    Direct Rendering Manager runtime library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libdwarf (more details)
    https://www.prevanders.net/dwarf.html

    The DWARF Debugging Information Format is of interest to programmers working on compilers and debuggers (and anyone interested in reading or writing DWARF information))

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libedit (more details)
    https://thrysoee.dk/editline

    This BSD-style licensed command line editor library provides generic line editing, history, and tokenization functions, similar to those found in GNU Readline.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libepoxy (more details)
    https://github.com/anholt/libepoxy

    Epoxy is a library for handling OpenGL function pointer management for you

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libev (more details)
    http://software.schmorp.de/pkg/libev.html

    A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libevdev (more details)
    https://gitlab.freedesktop.org/libevdev/libevdev

    Wrapper library for evdev devices

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libevent (more details)
    https://libevent.org

    The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libfabric (more details)
    https://ofiwg.github.io/libfabric

    Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libfdf (more details)
    https://gitlab.com/siesta-project/libraries/libfdf

    LibFDF is the official implementation of the FDF specifications for use in client codes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libffi (more details)
    https://sourceware.org/libffi

    The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libfontenc (extension)

    libfontenc is a that is included as extension in the following software installations:

  • libFS (extension)

    libFS is a that is included as extension in the following software installations:

  • libgcrypt (more details)
    https://gnupg.org/related_software/libgcrypt/index.html

    Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libgd (more details)
    https://libgd.github.io

    GD is an open source code library for the dynamic creation of images by programmers.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libgeotiff (more details)
    https://directory.fsf.org/wiki/Libgeotiff

    Library for reading and writing coordinate system information from/to GeoTIFF files

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libgit2 (more details)
    https://libgit2.org

    libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libGLU (more details)
    https://mesa.freedesktop.org/archive/glu, https://gitlab.freedesktop.org/mesa/glu

    The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libGLU (extension)

    libGLU is a that is included as extension in the following software installations:

  • libglvnd (more details)
    https://gitlab.freedesktop.org/glvnd/libglvnd

    libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libglvnd (extension)

    libglvnd is a that is included as extension in the following software installations:

  • libgpg-error (more details)
    https://gnupg.org/related_software/libgpg-error/index.html

    Libgpg-error is a small library that defines common error values for all GnuPG components.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libGridXC (more details)
    https://gitlab.com/siesta-project/libraries/libgridxc

    A library to compute the exchange and correlation energy and potential in spherical (i.e. atoms) or periodic systems.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libheif (more details)
    https://github.com/strukturag/libheif

    libheif is an HEIF and AVIF file format decoder and encoder

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libICE (extension)

    libICE is a that is included as extension in the following software installations:

  • libiconv (more details)
    https://www.gnu.org/software/libiconv

    Libiconv converts from one character encoding to another through Unicode conversion

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libidn2 (more details)
    http://www.gnu.org/software/libidn2

    Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libinput (more details)
    https://gitlab.freedesktop.org/libinput/libinput

    Input device management and event handling library

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Libint (more details)
    https://github.com/evaleev/libint

    Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libjpeg-turbo (more details)
    https://libjpeg-turbo.org, https://sourceforge.net/projects/libjpeg-turbo

    libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libliftoff (more details)
    https://gitlab.freedesktop.org/emersion/libliftoff

    Lightweight KMS plane library.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libogg (more details)
    https://xiph.org/ogg

    Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libopus (more details)
    https://www.opus-codec.org

    Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libpciaccess (more details)
    https://cgit.freedesktop.org/xorg/lib/libpciaccess

    Generic PCI access library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libpng (more details)
    http://www.libpng.org/pub/png/libpng.html, https://www.libpng.org/pub/png/libpng.html

    libpng is the official PNG reference library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libpsl (more details)
    https://rockdaboot.github.io/libpsl

    C library for the Public Suffix List

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libPSML (more details)
    https://gitlab.com/siesta-project/libraries/libpsml

    A library to handle pseudopotentials in PSML format

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libpthread-stubs (extension)

    libpthread-stubs is a that is included as extension in the following software installations:

  • librosa (extension)

    librosa is a Python package that is included as extension in the following software installations:

  • librosa (more details)
    https://librosa.org

    Audio and music processing in Python

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • librsvg (more details)
    https://wiki.gnome.org/Projects/LibRsvg

    Librsvg is a library to render SVG files using cairo.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • librttopo (more details)
    https://git.osgeo.org/gitea/rttopo/librttopo

    The RT Topology Library exposes an API to create and manage standard (ISO 13249 aka SQL/MM) topologies using user-provided data stores.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libsfdo (more details)
    https://gitlab.freedesktop.org/vyivel/libsfdo

    A collection of libraries which implement some of the freedesktop.org specifications.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libSM (extension)

    libSM is a that is included as extension in the following software installations:

  • libsndfile (more details)
    http://www.mega-nerd.com/libsndfile

    Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libsodium (more details)
    https://doc.libsodium.org

    Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • LibSoup (more details)
    https://wiki.gnome.org/Projects/libsoup

    libsoup is an HTTP client/server library for GNOME. It uses GObjects and the glib main loop, to integrate well with GNOME applications, and also has a synchronous API, for use in threaded applications.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libspatialindex (more details)
    https://libspatialindex.org

    C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libspatialite (more details)
    https://www.gaia-gis.it/fossil/libspatialite/home

    SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libtasn1 (more details)
    https://www.gnu.org/software/libtasn1

    Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • LibTIFF (more details)
    https://libtiff.gitlab.io/libtiff

    tiff: Library and tools for reading and writing TIFF data files

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libtirpc (more details)
    https://sourceforge.net/projects/libtirpc

    Libtirpc is a port of Suns Transport-Independent RPC library to Linux.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libtommath (more details)
    https://www.libtom.net/LibTomMath

    LibTomMath is a free open source portable number theoretic multiple-precision integer (MPI) library written entirely in C.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libtool (more details)
    https://www.gnu.org/software/libtool

    GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libunistring (more details)
    https://www.gnu.org/software/libunistring

    This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libunwind (more details)
    https://www.nongnu.org/libunwind

    The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libvorbis (more details)
    https://xiph.org/vorbis

    Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libvori (more details)
    https://brehm-research.de/libvori.php

    C++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libvpx (more details)
    http://www.webmproject.org

    VPx are open and royalty free video compression formats owned by Google.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libwebp (more details)
    https://developers.google.com/speed/webp

    WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libwnck (more details)
    https://gitlab.gnome.org/GNOME/libwnck

    libwnck is Window Navigator Construction Kit, i.e. a library to use for writing pagers and taskslists and stuff.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libwpe (more details)
    https://webkit.org/wpe

    WPE is the reference WebKit port for embedded and low-consumption computer devices. It has been designed from the ground-up with performance, small footprint, accelerated content rendering, and simplicity of deployment in mind, bringing the excellence of the WebKit engine to countless platforms and target devices.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libX11 (extension)

    libX11 is a that is included as extension in the following software installations:

  • libXau (extension)

    libXau is a that is included as extension in the following software installations:

  • libXaw (extension)

    libXaw is a that is included as extension in the following software installations:

  • libxc (more details)
    https://www.tddft.org/programs/libxc

    Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libxcb (extension)

    libxcb is a that is included as extension in the following software installations:

  • libXcomposite (extension)

    libXcomposite is a that is included as extension in the following software installations:

  • libXcursor (extension)

    libXcursor is a that is included as extension in the following software installations:

  • libxcvt (extension)

    libxcvt is a that is included as extension in the following software installations:

  • libXdamage (extension)

    libXdamage is a that is included as extension in the following software installations:

  • libXdmcp (extension)

    libXdmcp is a that is included as extension in the following software installations:

  • libXext (extension)

    libXext is a that is included as extension in the following software installations:

  • libXfixes (extension)

    libXfixes is a that is included as extension in the following software installations:

  • libXfont (extension)

    libXfont is a that is included as extension in the following software installations:

  • libXfont2 (extension)

    libXfont2 is a that is included as extension in the following software installations:

  • libXft (extension)

    libXft is a that is included as extension in the following software installations:

  • libXi (extension)

    libXi is a that is included as extension in the following software installations:

  • libXinerama (extension)

    libXinerama is a that is included as extension in the following software installations:

  • libxkbcommon (extension)

    libxkbcommon is a that is included as extension in the following software installations:

  • libxkbfile (extension)

    libxkbfile is a that is included as extension in the following software installations:

  • libxml2 (more details)
    https://gitlab.gnome.org/GNOME/libxml2/-/wikis, http://xmlsoft.org

    Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libxml2-python (more details)
    http://xmlsoft.org

    Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). This is the Python binding.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libXmu (extension)

    libXmu is a that is included as extension in the following software installations:

  • libXp (extension)

    libXp is a that is included as extension in the following software installations:

  • libXpm (extension)

    libXpm is a that is included as extension in the following software installations:

  • libXpresent (extension)

    libXpresent is a that is included as extension in the following software installations:

  • libXrandr (extension)

    libXrandr is a that is included as extension in the following software installations:

  • libXrender (extension)

    libXrender is a that is included as extension in the following software installations:

  • libXres (extension)

    libXres is a that is included as extension in the following software installations:

  • libXScrnSaver (extension)

    libXScrnSaver is a that is included as extension in the following software installations:

  • libxshmfence (extension)

    libxshmfence is a that is included as extension in the following software installations:

  • libxslt (more details)
    https://gitlab.gnome.org/GNOME/libxslt/-/wikis, http://xmlsoft.org

    Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • libxsmm (more details)
    https://github.com/hfp/libxsmm

    LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntel
    Supported GPU families: (none)

  • libXt (extension)

    libXt is a that is included as extension in the following software installations:

  • libXtst (extension)

    libXtst is a that is included as extension in the following software installations:

  • libXv (extension)

    libXv is a that is included as extension in the following software installations:

  • libXvMC (extension)

    libXvMC is a that is included as extension in the following software installations:

  • libXxf86dga (extension)

    libXxf86dga is a that is included as extension in the following software installations:

  • libXxf86vm (extension)

    libXxf86vm is a that is included as extension in the following software installations:

  • libyaml (more details)
    https://pyyaml.org/wiki/LibYAML

    LibYAML is a YAML parser and emitter written in C.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lifecycle (extension)

    lifecycle is a R library that is included as extension in the following software installations:

  • lightgbm (extension)

    lightgbm is a Python package that is included as extension in the following software installations:

  • LightGBM (more details)
    https://lightgbm.readthedocs.io

    A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • limma (extension)

    limma is a R library that is included as extension in the following software installations:

  • limSolve (extension)

    limSolve is a R library that is included as extension in the following software installations:

  • LINC (extension)

    LINC is a Python package that is included as extension in the following software installations:

  • LINC (more details)
    https://linc.readthedocs.io/en/latest

    LINC is a pipeline to correct for various instrumental and ionospheric effects in both LOFAR HBA and LOFAR LBA observations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Lingua::EN::PluralToSingular (extension)

    Lingua::EN::PluralToSingular is a Perl module that is included as extension in the following software installations:

  • linkcomm (extension)

    linkcomm is a R library that is included as extension in the following software installations:

  • linprog (extension)

    linprog is a R library that is included as extension in the following software installations:

  • liquidSVM (extension)

    liquidSVM is a R library that is included as extension in the following software installations:

  • List::AllUtils (extension)

    List::AllUtils is a Perl module that is included as extension in the following software installations:

  • List::MoreUtils (extension)

    List::MoreUtils is a Perl module that is included as extension in the following software installations:

  • List::MoreUtils::XS (extension)

    List::MoreUtils::XS is a Perl module that is included as extension in the following software installations:

  • List::SomeUtils (extension)

    List::SomeUtils is a Perl module that is included as extension in the following software installations:

  • List::Util (extension)

    List::Util is a Perl module that is included as extension in the following software installations:

  • List::UtilsBy (extension)

    List::UtilsBy is a Perl module that is included as extension in the following software installations:

  • listenv (extension)

    listenv is a R library that is included as extension in the following software installations:

  • lit (extension)

    lit is a Python package that is included as extension in the following software installations:

  • lit (more details)
    https://llvm.org/docs/CommandGuide/lit.html

    lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • LittleCMS (more details)
    https://www.littlecms.com

    Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • LLVM (more details)
    https://llvm.org

    The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • llvm-compilers (more details)
    https://llvm.org

    The LLVM Project is a collection of modular and reusable compiler and toolchain technologies.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • llvmlite (extension)

    llvmlite is a Python package that is included as extension in the following software installations:

  • LMDB (more details)
    https://symas.com/lmdb

    LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lme4 (extension)

    lme4 is a R library that is included as extension in the following software installations:

  • LMERConvenienceFunctions (extension)

    LMERConvenienceFunctions is a R library that is included as extension in the following software installations:

  • lmerTest (extension)

    lmerTest is a R library that is included as extension in the following software installations:

  • lmom (extension)

    lmom is a R library that is included as extension in the following software installations:

  • Lmoments (extension)

    Lmoments is a R library that is included as extension in the following software installations:

  • lmtest (extension)

    lmtest is a R library that is included as extension in the following software installations:

  • lobstr (extension)

    lobstr is a R library that is included as extension in the following software installations:

  • local::lib (extension)

    local::lib is a Perl module that is included as extension in the following software installations:

  • Locale::Maketext::Simple (extension)

    Locale::Maketext::Simple is a Perl module that is included as extension in the following software installations:

  • locfdr (extension)

    locfdr is a R library that is included as extension in the following software installations:

  • locfit (extension)

    locfit is a R library that is included as extension in the following software installations:

  • locket (extension)

    locket is a Python package that is included as extension in the following software installations:

  • lockfile (extension)

    lockfile is a Python package that is included as extension in the following software installations:

  • LofarStMan (more details)
    https://github.com/lofar-astron/LofarStMan

    This package provides a casacore storage manager to read raw correlator output of the LOFAR telescope.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • log4r (extension)

    log4r is a R library that is included as extension in the following software installations:

  • Log::Dispatch (extension)

    Log::Dispatch is a Perl module that is included as extension in the following software installations:

  • Log::Dispatch::Array (extension)

    Log::Dispatch::Array is a Perl module that is included as extension in the following software installations:

  • Log::Dispatchouli (extension)

    Log::Dispatchouli is a Perl module that is included as extension in the following software installations:

  • Log::Handler (extension)

    Log::Handler is a Perl module that is included as extension in the following software installations:

  • Log::Log4perl (extension)

    Log::Log4perl is a Perl module that is included as extension in the following software installations:

  • Log::Message (extension)

    Log::Message is a Perl module that is included as extension in the following software installations:

  • Log::Message::Simple (extension)

    Log::Message::Simple is a Perl module that is included as extension in the following software installations:

  • Log::Report (extension)

    Log::Report is a Perl module that is included as extension in the following software installations:

  • Log::Report::Optional (extension)

    Log::Report::Optional is a Perl module that is included as extension in the following software installations:

  • logcondens (extension)

    logcondens is a R library that is included as extension in the following software installations:

  • logger (extension)

    logger is a R library that is included as extension in the following software installations:

  • Logger::Simple (extension)

    Logger::Simple is a Perl module that is included as extension in the following software installations:

  • logging (extension)

    logging is a R library that is included as extension in the following software installations:

  • logistf (extension)

    logistf is a R library that is included as extension in the following software installations:

  • logspline (extension)

    logspline is a R library that is included as extension in the following software installations:

  • lompi (more details)
    (none)

    LLVM based compiler toolchain, including OpenMPI for MPI support.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • longitudinal (extension)

    longitudinal is a R library that is included as extension in the following software installations:

  • longmemo (extension)

    longmemo is a R library that is included as extension in the following software installations:

  • loo (extension)

    loo is a R library that is included as extension in the following software installations:

  • LoopTools (more details)
    https://feynarts.de/looptools

    LoopTools is a package for evaluation of scalar and tensor one-loop integrals. It is based on the FF package by G.J. van Oldenborgh.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • looseversion (extension)

    looseversion is a Python package that is included as extension in the following software installations:

  • LoSoTo (extension)

    LoSoTo is a Python package that is included as extension in the following software installations:

  • LoSoTo (more details)
    https://revoltek.github.io/losoto

    LoSoTo: LOFAR solutions tool

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lpc3d (extension)

    lpc3d is a Python package that is included as extension in the following software installations:

  • LPC3D (more details)
    https://github.com/multixscale/LPC3D

    A code to do mesoscopic simulations of ions diffusing in carbon particles and of full supercapacitors.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lpSolve (extension)

    lpSolve is a R library that is included as extension in the following software installations:

  • lpsolve (more details)
    https://sourceforge.net/projects/lpsolve

    Mixed Integer Linear Programming (MILP) solver

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lpSolveAPI (extension)

    lpSolveAPI is a R library that is included as extension in the following software installations:

  • lpsymphony (extension)

    lpsymphony is a R library that is included as extension in the following software installations:

  • lqa (extension)

    lqa is a R library that is included as extension in the following software installations:

  • LRBinner (extension)

    LRBinner is a Python package that is included as extension in the following software installations:

  • LRBinner (more details)
    https://github.com/anuradhawick/LRBinner

    LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lsa (extension)

    lsa is a R library that is included as extension in the following software installations:

  • LSD2 (more details)
    https://github.com/tothuhien/lsd2

    Least-squares methods to estimate rates and dates from phylogenies

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lsei (extension)

    lsei is a R library that is included as extension in the following software installations:

  • lslx (extension)

    lslx is a R library that is included as extension in the following software installations:

  • lsmtool (extension)

    lsmtool is a Python package that is included as extension in the following software installations:

  • LSMTool (more details)
    https://lsmtool.readthedocs.io/en/latest

    LSMTool is a Python package which allows for the manipulation of LOFAR sky models in the makesourcedb format.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Lua (more details)
    https://www.lua.org

    Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • luaposix (more details)
    http://luaposix.github.io/luaposix

    A library binding various POSIX APIs. POSIX is the IEEE Portable Operating System Interface standard. luaposix is based on lposix.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lubridate (extension)

    lubridate is a R library that is included as extension in the following software installations:

  • lumi (extension)

    lumi is a R library that is included as extension in the following software installations:

  • lwgeom (extension)

    lwgeom is a R library that is included as extension in the following software installations:

  • LWP::MediaTypes (extension)

    LWP::MediaTypes is a Perl module that is included as extension in the following software installations:

  • LWP::Protocol::https (extension)

    LWP::Protocol::https is a Perl module that is included as extension in the following software installations:

  • LWP::Simple (extension)

    LWP::Simple is a Perl module that is included as extension in the following software installations:

  • lxml (more details)
    https://lxml.de

    The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lz4 (more details)
    https://lz4.github.io/lz4

    LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lz4 (extension)

    lz4 is a Python package that is included as extension in the following software installations:

  • LZO (more details)
    https://www.oberhumer.com/opensource/lzo

    Portable lossless data compression library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • lzstring (extension)

    lzstring is a Python package that is included as extension in the following software installations:

  • m (extension)

    m is a R library that is included as extension in the following software installations:

  • M3Drop (extension)

    M3Drop is a R library that is included as extension in the following software installations:

  • M4 (more details)
    https://www.gnu.org/software/m4/m4.html

    GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Maaslin2 (extension)

    Maaslin2 is a R library that is included as extension in the following software installations:

  • maeparser (more details)
    https://github.com/schrodinger/maeparser

    maeparser is a parser for Schrodinger Maestro files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MAFFT (extension)

    MAFFT is a that is included as extension in the following software installations:

  • MAFFT (more details)
    https://mafft.cbrc.jp/alignment/software/source.html

    MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of less than ∼200 sequences), FFT-NS-2 (fast; for alignment of less than ∼30,000 sequences), etc.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MAFFT Extensions (extension)

    MAFFT Extensions is a that is included as extension in the following software installations:

  • maggma (extension)

    maggma is a Python package that is included as extension in the following software installations:

  • magic (extension)

    magic is a R library that is included as extension in the following software installations:

  • magick (extension)

    magick is a R library that is included as extension in the following software installations:

  • magrittr (extension)

    magrittr is a R library that is included as extension in the following software installations:

  • Mail::Util (extension)

    Mail::Util is a Perl module that is included as extension in the following software installations:

  • make (more details)
    https://www.gnu.org/software/make/make.html

    GNU version of make utility

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Mako (extension)

    Mako is a Python package that is included as extension in the following software installations:

  • Mako (more details)
    https://www.makotemplates.org

    A super-fast templating language that borrows the best ideas from the existing templating languages

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MALDIquant (extension)

    MALDIquant is a R library that is included as extension in the following software installations:

  • mallard-ducktype (more details)
    https://github.com/projectmallard/mallard-ducktype

    Parser for the lightweight Ducktype syntax for Mallard

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • manipulateWidget (extension)

    manipulateWidget is a R library that is included as extension in the following software installations:

  • mapclassify (extension)

    mapclassify is a Python package that is included as extension in the following software installations:

  • mapproj (extension)

    mapproj is a R library that is included as extension in the following software installations:

  • mappy (extension)

    mappy is a Python package that is included as extension in the following software installations:

  • maps (extension)

    maps is a R library that is included as extension in the following software installations:

  • maptools (extension)

    maptools is a R library that is included as extension in the following software installations:

  • MAQAO (more details)
    https://maqao.org

    MAQAO (Modular Assembly Quality Analyzer and Optimizer) is a performance analysis and optimization framework operating at binary level with a focus on core performance. Its main goal of is to guide application developers along the optimization process through synthetic reports and hints. MAQAO mixes both dynamic and static analyses based on its ability to reconstruct high level structures such as functions and loops from an application binary. Since MAQAO operates at binary level, it is agnostic with regard to the language used in the source code and does not require recompiling the application to perform analyses.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MariaDB (more details)
    https://mariadb.org

    MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Markdown (extension)

    Markdown is a Python package that is included as extension in the following software installations:

  • Markdown (more details)
    https://python-markdown.github.io

    This is a Python implementation of John Gruber's Markdown. It is almost completely compliant with the reference implementation, though there are a few known issues. Additional features are supported by the Available Extensions.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • markdown (extension)

    markdown is a R library that is included as extension in the following software installations:

  • markdown-it-py (extension)

    markdown-it-py is a Python package that is included as extension in the following software installations:

  • MarkupSafe (extension)

    MarkupSafe is a Python package that is included as extension in the following software installations:

  • MarkUpSafe (extension)

    MarkUpSafe is a Python package that is included as extension in the following software installations:

  • marray (extension)

    marray is a R library that is included as extension in the following software installations:

  • Mash (more details)
    http://mash.readthedocs.org

    Fast genome and metagenome distance estimation using MinHash

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • maSigPro (extension)

    maSigPro is a R library that is included as extension in the following software installations:

  • MASS (extension)

    MASS is a R library that is included as extension in the following software installations:

  • MassSpecWavelet (extension)

    MassSpecWavelet is a R library that is included as extension in the following software installations:

  • Matching (extension)

    Matching is a R library that is included as extension in the following software installations:

  • MatchIt (extension)

    MatchIt is a R library that is included as extension in the following software installations:

  • Math::Bezier (extension)

    Math::Bezier is a Perl module that is included as extension in the following software installations:

  • Math::CDF (extension)

    Math::CDF is a Perl module that is included as extension in the following software installations:

  • Math::Round (extension)

    Math::Round is a Perl module that is included as extension in the following software installations:

  • Math::Utils (extension)

    Math::Utils is a Perl module that is included as extension in the following software installations:

  • Math::VecStat (extension)

    Math::VecStat is a Perl module that is included as extension in the following software installations:

  • mathjaxr (extension)

    mathjaxr is a R library that is included as extension in the following software installations:

  • matlab (extension)

    matlab is a R library that is included as extension in the following software installations:

  • matplotlib (extension)

    matplotlib is a Python package that is included as extension in the following software installations:

  • matplotlib (more details)
    https://matplotlib.org

    matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • matplotlib-inline (extension)

    matplotlib-inline is a Python package that is included as extension in the following software installations:

  • matplotlib_inline (extension)

    matplotlib_inline is a Python package that is included as extension in the following software installations:

  • Matrix (extension)

    Matrix is a R library that is included as extension in the following software installations:

  • matrixcalc (extension)

    matrixcalc is a R library that is included as extension in the following software installations:

  • MatrixGenerics (extension)

    MatrixGenerics is a R library that is included as extension in the following software installations:

  • MatrixModels (extension)

    MatrixModels is a R library that is included as extension in the following software installations:

  • matrixStats (extension)

    matrixStats is a R library that is included as extension in the following software installations:

  • maturin (more details)
    https://github.com/pyo3/maturin

    This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • maxLik (extension)

    maxLik is a R library that is included as extension in the following software installations:

  • maxlike (extension)

    maxlike is a R library that is included as extension in the following software installations:

  • maxnet (extension)

    maxnet is a R library that is included as extension in the following software installations:

  • MBA (extension)

    MBA is a R library that is included as extension in the following software installations:

  • mboost (extension)

    mboost is a R library that is included as extension in the following software installations:

  • MBX (more details)
    https://github.com/paesanilab/MBX

    MBX is an energy and force calculator for data-driven many-body simulations

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MCE::Mutex (extension)

    MCE::Mutex is a Perl module that is included as extension in the following software installations:

  • MCL (more details)
    https://micans.org/mcl

    The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs (also known as networks) based on simulation of (stochastic) flow in graphs.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mclogit (extension)

    mclogit is a R library that is included as extension in the following software installations:

  • mclust (extension)

    mclust is a R library that is included as extension in the following software installations:

  • mcmc (extension)

    mcmc is a R library that is included as extension in the following software installations:

  • MCMCpack (extension)

    MCMCpack is a R library that is included as extension in the following software installations:

  • mcmcse (extension)

    mcmcse is a R library that is included as extension in the following software installations:

  • mctc-lib (more details)
    https://grimme-lab.github.io/mctc-lib

    Common tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mda (extension)

    mda is a R library that is included as extension in the following software installations:

  • MDAnalysis (extension)

    MDAnalysis is a Python package that is included as extension in the following software installations:

  • MDAnalysis (more details)
    https://www.mdanalysis.org

    MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MDI (more details)
    https://github.com/MolSSI-MDI/MDI_Library

    The MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mdurl (extension)

    mdurl is a Python package that is included as extension in the following software installations:

  • medflex (extension)

    medflex is a R library that is included as extension in the following software installations:

  • mediation (extension)

    mediation is a R library that is included as extension in the following software installations:

  • MEDIPS (extension)

    MEDIPS is a R library that is included as extension in the following software installations:

  • MEGAHIT (more details)
    https://github.com/voutcn/megahit

    An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • memisc (extension)

    memisc is a R library that is included as extension in the following software installations:

  • memoise (extension)

    memoise is a R library that is included as extension in the following software installations:

  • memuse (extension)

    memuse is a R library that is included as extension in the following software installations:

  • Mesa (more details)
    https://www.mesa3d.org

    Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Mesa (extension)

    Mesa is a that is included as extension in the following software installations:

  • Mesa-demos (extension)

    Mesa-demos is a that is included as extension in the following software installations:

  • Meson (more details)
    https://mesonbuild.com

    Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • meson-python (extension)

    meson-python is a Python package that is included as extension in the following software installations:

  • meson-python (more details)
    https://github.com/mesonbuild/meson-python

    Python build backend (PEP 517) for Meson projects

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MESS (extension)

    MESS is a R library that is included as extension in the following software installations:

  • Meta::Builder (extension)

    Meta::Builder is a Perl module that is included as extension in the following software installations:

  • MetaBAT (more details)
    https://bitbucket.org/berkeleylab/metabat

    MetaBAT: A robust statistical framework for reconstructing genomes from metagenomic data

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MetaboCoreUtils (extension)

    MetaboCoreUtils is a R library that is included as extension in the following software installations:

  • metadat (extension)

    metadat is a R library that is included as extension in the following software installations:

  • MetaEuk (more details)
    https://metaeuk.soedinglab.org

    MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • metafor (extension)

    metafor is a R library that is included as extension in the following software installations:

  • metagenomeSeq (extension)

    metagenomeSeq is a R library that is included as extension in the following software installations:

  • MetalWalls (more details)
    https://gitlab.com/ampere2/metalwalls

    MetalWalls (MW) is a molecular dynamics code dedicated to the modelling of electrochemical systems. Its main originality is the inclusion of a series of methods allowing to apply a constant potential within the electrode materials.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • metaMA (extension)

    metaMA is a R library that is included as extension in the following software installations:

  • metap (extension)

    metap is a R library that is included as extension in the following software installations:

  • metapod (extension)

    metapod is a R library that is included as extension in the following software installations:

  • MetaUtility (extension)

    MetaUtility is a R library that is included as extension in the following software installations:

  • MethylSeekR (extension)

    MethylSeekR is a R library that is included as extension in the following software installations:

  • methylumi (extension)

    methylumi is a R library that is included as extension in the following software installations:

  • METIS (more details)
    http://glaros.dtc.umn.edu/gkhome/metis/metis/overview, https://karypis.github.io/glaros/projects/gp.html

    METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mets (extension)

    mets is a R library that is included as extension in the following software installations:

  • Mfuzz (extension)

    Mfuzz is a R library that is included as extension in the following software installations:

  • mgcv (extension)

    mgcv is a R library that is included as extension in the following software installations:

  • mgsub (extension)

    mgsub is a R library that is included as extension in the following software installations:

  • mhsmm (extension)

    mhsmm is a R library that is included as extension in the following software installations:

  • mi (extension)

    mi is a R library that is included as extension in the following software installations:

  • mia (extension)

    mia is a R library that is included as extension in the following software installations:

  • mice (extension)

    mice is a R library that is included as extension in the following software installations:

  • miceadds (extension)

    miceadds is a R library that is included as extension in the following software installations:

  • microbenchmark (extension)

    microbenchmark is a R library that is included as extension in the following software installations:

  • MicrobiomeStat (extension)

    MicrobiomeStat is a R library that is included as extension in the following software installations:

  • MIIVsem (extension)

    MIIVsem is a R library that is included as extension in the following software installations:

  • mime (extension)

    mime is a R library that is included as extension in the following software installations:

  • MIME::Base32 (extension)

    MIME::Base32 is a Perl module that is included as extension in the following software installations:

  • MIME::Base64 (extension)

    MIME::Base64 is a Perl module that is included as extension in the following software installations:

  • MIME::Charset (extension)

    MIME::Charset is a Perl module that is included as extension in the following software installations:

  • MIME::Lite (extension)

    MIME::Lite is a Perl module that is included as extension in the following software installations:

  • MIME::Types (extension)

    MIME::Types is a Perl module that is included as extension in the following software installations:

  • minerva (extension)

    minerva is a R library that is included as extension in the following software installations:

  • minfi (extension)

    minfi is a R library that is included as extension in the following software installations:

  • minimap2 (more details)
    https://github.com/lh3/minimap2

    Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • minitest (extension)

    minitest is a that is included as extension in the following software installations:

  • miniUI (extension)

    miniUI is a R library that is included as extension in the following software installations:

  • minizip (more details)
    https://www.winimage.com/zLibDll/minizip.html

    Mini zip and unzip based on zlib

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • minpack.lm (extension)

    minpack.lm is a R library that is included as extension in the following software installations:

  • minqa (extension)

    minqa is a R library that is included as extension in the following software installations:

  • minty (extension)

    minty is a R library that is included as extension in the following software installations:

  • mirt (extension)

    mirt is a R library that is included as extension in the following software installations:

  • misc3d (extension)

    misc3d is a R library that is included as extension in the following software installations:

  • miscTools (extension)

    miscTools is a R library that is included as extension in the following software installations:

  • missForest (extension)

    missForest is a R library that is included as extension in the following software installations:

  • missMDA (extension)

    missMDA is a R library that is included as extension in the following software installations:

  • missMethyl (extension)

    missMethyl is a R library that is included as extension in the following software installations:

  • mistune (extension)

    mistune is a Python package that is included as extension in the following software installations:

  • mitml (extension)

    mitml is a R library that is included as extension in the following software installations:

  • mitools (extension)

    mitools is a R library that is included as extension in the following software installations:

  • Mixin::Linewise::Readers (extension)

    Mixin::Linewise::Readers is a Perl module that is included as extension in the following software installations:

  • mixOmics (extension)

    mixOmics is a R library that is included as extension in the following software installations:

  • mixsqp (extension)

    mixsqp is a R library that is included as extension in the following software installations:

  • mixtools (extension)

    mixtools is a R library that is included as extension in the following software installations:

  • mkfontdir (extension)

    mkfontdir is a that is included as extension in the following software installations:

  • mkfontscale (extension)

    mkfontscale is a that is included as extension in the following software installations:

  • ml_dtypes (extension)

    ml_dtypes is a Python package that is included as extension in the following software installations:

  • ml_dtypes (more details)
    https://github.com/jax-ml/ml_dtypes

    ml_dtypes is a stand-alone implementation of several NumPy dtype extensions used in machine learning libraries, including: bfloat16: an alternative to the standard float16 format float8_*: several experimental 8-bit floating point representations including: float8_e4m3b11fnuz float8_e4m3fn float8_e4m3fnuz float8_e5m2 float8_e5m2fnuz

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mlbench (extension)

    mlbench is a R library that is included as extension in the following software installations:

  • mlegp (extension)

    mlegp is a R library that is included as extension in the following software installations:

  • mlflow (extension)

    mlflow is a Python package that is included as extension in the following software installations:

  • MLflow (more details)
    https://mlflow.org

    MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mlflow_skinny (extension)

    mlflow_skinny is a Python package that is included as extension in the following software installations:

  • MLInterfaces (extension)

    MLInterfaces is a R library that is included as extension in the following software installations:

  • MLmetrics (extension)

    MLmetrics is a R library that is included as extension in the following software installations:

  • mlogit (extension)

    mlogit is a R library that is included as extension in the following software installations:

  • mlr (extension)

    mlr is a R library that is included as extension in the following software installations:

  • mlrMBO (extension)

    mlrMBO is a R library that is included as extension in the following software installations:

  • mltools (extension)

    mltools is a R library that is included as extension in the following software installations:

  • MMseqs2 (more details)
    https://mmseqs.com

    MMseqs2: ultra fast and sensitive search and clustering suite

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mmtf-python (extension)

    mmtf-python is a Python package that is included as extension in the following software installations:

  • mnormt (extension)

    mnormt is a R library that is included as extension in the following software installations:

  • mock (extension)

    mock is a Python package that is included as extension in the following software installations:

  • Mock::Quick (extension)

    Mock::Quick is a Perl module that is included as extension in the following software installations:

  • modeest (extension)

    modeest is a R library that is included as extension in the following software installations:

  • ModelMetrics (extension)

    ModelMetrics is a R library that is included as extension in the following software installations:

  • modelr (extension)

    modelr is a R library that is included as extension in the following software installations:

  • modeltools (extension)

    modeltools is a R library that is included as extension in the following software installations:

  • MODFLOW (more details)
    https://www.usgs.gov/mission-areas/water-resources/science/modflow-and-related-programs

    MODFLOW is the USGS's modular hydrologic model. MODFLOW is considered an international standard for simulating and predicting groundwater conditions and groundwater/surface-water interactions.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MODIStsp (extension)

    MODIStsp is a R library that is included as extension in the following software installations:

  • modsem (extension)

    modsem is a R library that is included as extension in the following software installations:

  • Module::Build (extension)

    Module::Build is a Perl module that is included as extension in the following software installations:

  • Module::Build::Tiny (extension)

    Module::Build::Tiny is a Perl module that is included as extension in the following software installations:

  • Module::Build::XSUtil (extension)

    Module::Build::XSUtil is a Perl module that is included as extension in the following software installations:

  • Module::CoreList (extension)

    Module::CoreList is a Perl module that is included as extension in the following software installations:

  • Module::Implementation (extension)

    Module::Implementation is a Perl module that is included as extension in the following software installations:

  • Module::Install (extension)

    Module::Install is a Perl module that is included as extension in the following software installations:

  • Module::Load (extension)

    Module::Load is a Perl module that is included as extension in the following software installations:

  • Module::Load::Conditional (extension)

    Module::Load::Conditional is a Perl module that is included as extension in the following software installations:

  • Module::Metadata (extension)

    Module::Metadata is a Perl module that is included as extension in the following software installations:

  • Module::Path (extension)

    Module::Path is a Perl module that is included as extension in the following software installations:

  • Module::Pluggable (extension)

    Module::Pluggable is a Perl module that is included as extension in the following software installations:

  • Module::Runtime (extension)

    Module::Runtime is a Perl module that is included as extension in the following software installations:

  • Module::Runtime::Conflicts (extension)

    Module::Runtime::Conflicts is a Perl module that is included as extension in the following software installations:

  • momentfit (extension)

    momentfit is a R library that is included as extension in the following software installations:

  • moments (extension)

    moments is a R library that is included as extension in the following software installations:

  • mongogrant (extension)

    mongogrant is a Python package that is included as extension in the following software installations:

  • mongomock (extension)

    mongomock is a Python package that is included as extension in the following software installations:

  • MonteCarlo (extension)

    MonteCarlo is a R library that is included as extension in the following software installations:

  • monty (extension)

    monty is a Python package that is included as extension in the following software installations:

  • Moo (extension)

    Moo is a Perl module that is included as extension in the following software installations:

  • Moose (extension)

    Moose is a Perl module that is included as extension in the following software installations:

  • MooseX::LazyRequire (extension)

    MooseX::LazyRequire is a Perl module that is included as extension in the following software installations:

  • MooseX::OneArgNew (extension)

    MooseX::OneArgNew is a Perl module that is included as extension in the following software installations:

  • MooseX::Role::Parameterized (extension)

    MooseX::Role::Parameterized is a Perl module that is included as extension in the following software installations:

  • MooseX::SetOnce (extension)

    MooseX::SetOnce is a Perl module that is included as extension in the following software installations:

  • MooseX::Types (extension)

    MooseX::Types is a Perl module that is included as extension in the following software installations:

  • MooseX::Types::Perl (extension)

    MooseX::Types::Perl is a Perl module that is included as extension in the following software installations:

  • more-itertools (extension)

    more-itertools is a Python package that is included as extension in the following software installations:

  • more_itertools (extension)

    more_itertools is a Python package that is included as extension in the following software installations:

  • mosaicCore (extension)

    mosaicCore is a R library that is included as extension in the following software installations:

  • MotifDb (extension)

    MotifDb is a R library that is included as extension in the following software installations:

  • motifmatchr (extension)

    motifmatchr is a R library that is included as extension in the following software installations:

  • motifStack (extension)

    motifStack is a R library that is included as extension in the following software installations:

  • Mouse (extension)

    Mouse is a Perl module that is included as extension in the following software installations:

  • Mozilla::CA (extension)

    Mozilla::CA is a Perl module that is included as extension in the following software installations:

  • mp-api (extension)

    mp-api is a Python package that is included as extension in the following software installations:

  • mpath (extension)

    mpath is a R library that is included as extension in the following software installations:

  • MPC (more details)
    http://www.multiprecision.org

    Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MPFR (more details)
    https://www.mpfr.org

    The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mpi4py (extension)

    mpi4py is a Python package that is included as extension in the following software installations:

  • mpi4py (more details)
    https://github.com/mpi4py/mpi4py

    MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mpl-ascii (extension)

    mpl-ascii is a Python package that is included as extension in the following software installations:

  • mpl-ascii (more details)
    https://github.com/chriscave/mpl_ascii

    A matplotlib backend that produces plots using only ASCII characters

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • MplusAutomation (extension)

    MplusAutomation is a R library that is included as extension in the following software installations:

  • mpmath (extension)

    mpmath is a Python package that is included as extension in the following software installations:

  • MrBayes (more details)
    https://nbisweden.github.io/MrBayes

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • mrcfile (extension)

    mrcfile is a Python package that is included as extension in the following software installations:

  • mRMRe (extension)

    mRMRe is a R library that is included as extension in the following software installations:

  • MRO::Compat (extension)

    MRO::Compat is a Perl module that is included as extension in the following software installations:

  • MsCoreUtils (extension)

    MsCoreUtils is a R library that is included as extension in the following software installations:

  • MsExperiment (extension)

    MsExperiment is a R library that is included as extension in the following software installations:

  • MsFeatures (extension)

    MsFeatures is a R library that is included as extension in the following software installations:

  • msgpack (extension)

    msgpack is a Python package that is included as extension in the following software installations:

  • msgspec (extension)

    msgspec is a Python package that is included as extension in the following software installations:

  • msigdbr (extension)

    msigdbr is a R library that is included as extension in the following software installations:

  • msm (extension)

    msm is a R library that is included as extension in the following software installations:

  • MSnbase (extension)

    MSnbase is a R library that is included as extension in the following software installations:

  • MSstats (extension)

    MSstats is a R library that is included as extension in the following software installations:

  • MSstatsConvert (extension)

    MSstatsConvert is a R library that is included as extension in the following software installations:

  • MSstatsLiP (extension)

    MSstatsLiP is a R library that is included as extension in the following software installations:

  • MSstatsPTM (extension)

    MSstatsPTM is a R library that is included as extension in the following software installations:

  • MSstatsTMT (extension)

    MSstatsTMT is a R library that is included as extension in the following software installations:

  • mstate (extension)

    mstate is a R library that is included as extension in the following software installations:

  • mstore (more details)
    https://github.com/grimme-lab/mstore

    Molecular structure store for testing

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • multcomp (extension)

    multcomp is a R library that is included as extension in the following software installations:

  • multcompView (extension)

    multcompView is a R library that is included as extension in the following software installations:

  • multi_json (extension)

    multi_json is a that is included as extension in the following software installations:

  • MultiAssayExperiment (extension)

    MultiAssayExperiment is a R library that is included as extension in the following software installations:

  • multicharge (more details)
    https://github.com/grimme-lab/multicharge

    Electronegativity equilibration model for atomic partial charges.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • multicool (extension)

    multicool is a R library that is included as extension in the following software installations:

  • MultiDataSet (extension)

    MultiDataSet is a R library that is included as extension in the following software installations:

  • multidict (extension)

    multidict is a Python package that is included as extension in the following software installations:

  • multipart-post (extension)

    multipart-post is a that is included as extension in the following software installations:

  • multipol (extension)

    multipol is a R library that is included as extension in the following software installations:

  • multiprocess (more details)
    https://github.com/uqfoundation/multiprocess

    better multiprocessing and multithreading in python

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • multiqc (extension)

    multiqc is a Python package that is included as extension in the following software installations:

  • MultiQC (more details)
    https://multiqc.info

    Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles an HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • multitaper (extension)

    multitaper is a R library that is included as extension in the following software installations:

  • multtest (extension)

    multtest is a R library that is included as extension in the following software installations:

  • MUMPS (more details)
    https://mumps-solver.org, https://graal.ens-lyon.fr/MUMPS

    A parallel sparse direct solver

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • munch (extension)

    munch is a Python package that is included as extension in the following software installations:

  • munsell (extension)

    munsell is a R library that is included as extension in the following software installations:

  • muscat (extension)

    muscat is a R library that is included as extension in the following software installations:

  • MUSCLE (more details)
    https://drive5.com/muscle

    MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Mustache (more details)
    https://github.com/ay-lab/mustache

    Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation) is a tool for multi-scale detection of chromatin loops from Hi-C and Micro-C contact maps in high resolutions (10kbp all the way to 500bp and even more). Mustache uses recent technical advances in scale-space theory in Computer Vision to detect chromatin loops caused by interaction of DNA segments with a variable size.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • mustermann (extension)

    mustermann is a that is included as extension in the following software installations:

  • mutoss (extension)

    mutoss is a R library that is included as extension in the following software installations:

  • mvabund (extension)

    mvabund is a R library that is included as extension in the following software installations:

  • mvnfast (extension)

    mvnfast is a R library that is included as extension in the following software installations:

  • mvtnorm (extension)

    mvtnorm is a R library that is included as extension in the following software installations:

  • mypy (extension)

    mypy is a Python package that is included as extension in the following software installations:

  • mypy-extensions (extension)

    mypy-extensions is a Python package that is included as extension in the following software installations:

  • mypy_extensions (extension)

    mypy_extensions is a Python package that is included as extension in the following software installations:

  • mzID (extension)

    mzID is a R library that is included as extension in the following software installations:

  • mzR (extension)

    mzR is a R library that is included as extension in the following software installations:

  • nabor (extension)

    nabor is a R library that is included as extension in the following software installations:

  • NADA (extension)

    NADA is a R library that is included as extension in the following software installations:

  • namespace::autoclean (extension)

    namespace::autoclean is a Perl module that is included as extension in the following software installations:

  • namespace::clean (extension)

    namespace::clean is a Perl module that is included as extension in the following software installations:

  • naniar (extension)

    naniar is a R library that is included as extension in the following software installations:

  • nanobind (more details)
    https://github.com/wjakob/nanobind

    nanobind is a small binding library for C++11 / C++17 / C++20 that heavily builds on capabilities introduced in recent versions of C++.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NASM (more details)
    https://www.nasm.us

    NASM: General-purpose x86 assembler

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • natserv (extension)

    natserv is a R library that is included as extension in the following software installations:

  • natsort (extension)

    natsort is a Python package that is included as extension in the following software installations:

  • naturalsort (extension)

    naturalsort is a R library that is included as extension in the following software installations:

  • nbclient (extension)

    nbclient is a Python package that is included as extension in the following software installations:

  • nbconvert (extension)

    nbconvert is a Python package that is included as extension in the following software installations:

  • nbformat (extension)

    nbformat is a Python package that is included as extension in the following software installations:

  • ncbi-vdb (more details)
    https://github.com/ncbi/ncbi-vdb

    The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ncbit (extension)

    ncbit is a R library that is included as extension in the following software installations:

  • NCCL (more details)
    https://developer.nvidia.com/nccl

    The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • ncdf4 (extension)

    ncdf4 is a R library that is included as extension in the following software installations:

  • ncdfFlow (extension)

    ncdfFlow is a R library that is included as extension in the following software installations:

  • ncdu (more details)
    https://dev.yorhel.nl/ncdu

    Ncdu is a disk usage analyzer with an ncurses interface. It is designed to find space hogs on a remote server where you don't have an entire graphical setup available, but it is a useful tool even on regular desktop systems. Ncdu aims to be fast, simple and easy to use, and should be able to run in any minimal POSIX-like environment with ncurses installed.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NCmisc (extension)

    NCmisc is a R library that is included as extension in the following software installations:

  • NCO (more details)
    https://github.com/nco/nco

    The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ndindex (extension)

    ndindex is a Python package that is included as extension in the following software installations:

  • neko (more details)
    https://neko.cfd

    Neko is a portable framework for high-order spectral element flow simulations.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NEST (more details)
    https://www.nest-simulator.org

    NEST is a simulator for spiking neural network models that focuses on the dynamics, size and structure of neural systems rather than on the exact morphology of individual neurons.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • nest-asyncio (extension)

    nest-asyncio is a Python package that is included as extension in the following software installations:

  • nest_asyncio (extension)

    nest_asyncio is a Python package that is included as extension in the following software installations:

  • net-http-persistent (extension)

    net-http-persistent is a that is included as extension in the following software installations:

  • net-http-pipeline (extension)

    net-http-pipeline is a that is included as extension in the following software installations:

  • Net::Domain (extension)

    Net::Domain is a Perl module that is included as extension in the following software installations:

  • Net::HTTP (extension)

    Net::HTTP is a Perl module that is included as extension in the following software installations:

  • Net::SMTP::SSL (extension)

    Net::SMTP::SSL is a Perl module that is included as extension in the following software installations:

  • Net::SNMP (extension)

    Net::SNMP is a Perl module that is included as extension in the following software installations:

  • Net::SSLeay (extension)

    Net::SSLeay is a Perl module that is included as extension in the following software installations:

  • netaddr (extension)

    netaddr is a Python package that is included as extension in the following software installations:

  • netCDF (more details)
    https://www.unidata.ucar.edu/software/netcdf

    NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • netCDF-C++4 (more details)
    https://www.unidata.ucar.edu/software/netcdf

    NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • netCDF-Fortran (more details)
    https://www.unidata.ucar.edu/software/netcdf

    NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • netcdf4-python (extension)

    netcdf4-python is a Python package that is included as extension in the following software installations:

  • netcdf4-python (more details)
    https://unidata.github.io/netcdf4-python

    Python/numpy interface to netCDF.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • netifaces (extension)

    netifaces is a Python package that is included as extension in the following software installations:

  • nettle (more details)
    https://www.lysator.liu.se/~nisse/nettle

    Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • network (extension)

    network is a R library that is included as extension in the following software installations:

  • networkDynamic (extension)

    networkDynamic is a R library that is included as extension in the following software installations:

  • networkLite (extension)

    networkLite is a R library that is included as extension in the following software installations:

  • networkx (more details)
    https://pypi.python.org/pypi/networkx

    NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • neuralnet (extension)

    neuralnet is a R library that is included as extension in the following software installations:

  • neuRosim (extension)

    neuRosim is a R library that is included as extension in the following software installations:

  • Nextflow (more details)
    https://www.nextflow.io

    Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • nghttp2 (more details)
    https://github.com/nghttp2/nghttp2

    This is an implementation of the Hypertext Transfer Protocol version 2 in C. The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2. An HPACK encoder and decoder are available as a public API.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • nghttp3 (more details)
    https://github.com/ngtcp2/nghttp3

    nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C. It does not depend on any particular QUIC transport implementation.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ngs-tools (extension)

    ngs-tools is a Python package that is included as extension in the following software installations:

  • ngspatial (extension)

    ngspatial is a R library that is included as extension in the following software installations:

  • ngtcp2 (more details)
    https://github.com/ngtcp2/ngtcp2

    'Call it TCP/2. One More Time.' ngtcp2 project is an effort to implement RFC9000 QUIC protocol.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Ninja (more details)
    https://ninja-build.org

    Ninja is a small build system with a focus on speed.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NISTunits (extension)

    NISTunits is a R library that is included as extension in the following software installations:

  • nleqslv (extension)

    nleqslv is a R library that is included as extension in the following software installations:

  • nlme (extension)

    nlme is a R library that is included as extension in the following software installations:

  • nlohmann_json (more details)
    https://github.com/nlohmann/json

    JSON for Modern C++

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NLopt (more details)
    http://ab-initio.mit.edu/wiki/index.php/NLopt, https://nlopt.readthedocs.io/en/latest

    NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • nloptr (extension)

    nloptr is a R library that is included as extension in the following software installations:

  • NLP (extension)

    NLP is a R library that is included as extension in the following software installations:

  • nlsem (extension)

    nlsem is a R library that is included as extension in the following software installations:

  • NLTK (extension)

    NLTK is a Python package that is included as extension in the following software installations:

  • NLTK (more details)
    https://www.nltk.org

    NLTK is a leading platform for building Python programs to work with human language data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NMF (extension)

    NMF is a R library that is included as extension in the following software installations:

  • nnet (extension)

    nnet is a R library that is included as extension in the following software installations:

  • nnls (extension)

    nnls is a R library that is included as extension in the following software installations:

  • nodeenv (extension)

    nodeenv is a Python package that is included as extension in the following software installations:

  • nodejs (more details)
    https://nodejs.org

    Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NOISeq (extension)

    NOISeq is a R library that is included as extension in the following software installations:

  • nonnest2 (extension)

    nonnest2 is a R library that is included as extension in the following software installations:

  • nor1mix (extension)

    nor1mix is a R library that is included as extension in the following software installations:

  • norm (extension)

    norm is a R library that is included as extension in the following software installations:

  • nortest (extension)

    nortest is a R library that is included as extension in the following software installations:

  • notebook_shim (extension)

    notebook_shim is a Python package that is included as extension in the following software installations:

  • np (extension)

    np is a R library that is included as extension in the following software installations:

  • npsurv (extension)

    npsurv is a R library that is included as extension in the following software installations:

  • nptyping (extension)

    nptyping is a Python package that is included as extension in the following software installations:

  • NSPR (more details)
    https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR

    Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • NSS (more details)
    https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS

    Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • nsync (more details)
    https://github.com/google/nsync

    nsync is a C library that exports various synchronization primitives, such as mutexes

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • numactl (more details)
    https://github.com/numactl/numactl

    The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • numba (extension)

    numba is a Python package that is included as extension in the following software installations:

  • numba (more details)
    https://numba.pydata.org

    Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • numbat (extension)

    numbat is a R library that is included as extension in the following software installations:

  • Number::Compare (extension)

    Number::Compare is a Perl module that is included as extension in the following software installations:

  • Number::Format (extension)

    Number::Format is a Perl module that is included as extension in the following software installations:

  • numDeriv (extension)

    numDeriv is a R library that is included as extension in the following software installations:

  • numexpr (extension)

    numexpr is a Python package that is included as extension in the following software installations:

  • numpy (extension)

    numpy is a Python package that is included as extension in the following software installations:

  • oai (extension)

    oai is a R library that is included as extension in the following software installations:

  • oauthlib (extension)

    oauthlib is a Python package that is included as extension in the following software installations:

  • Object::Accessor (extension)

    Object::Accessor is a Perl module that is included as extension in the following software installations:

  • Object::InsideOut (extension)

    Object::InsideOut is a Perl module that is included as extension in the following software installations:

  • occt (more details)
    https://www.opencascade.com

    Open CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • oce (extension)

    oce is a R library that is included as extension in the following software installations:

  • OceanView (extension)

    OceanView is a R library that is included as extension in the following software installations:

  • Octave (more details)
    https://www.gnu.org/software/octave

    GNU Octave is a high-level interpreted language, primarily intended for numerical computations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • oddsratio (extension)

    oddsratio is a R library that is included as extension in the following software installations:

  • officer (extension)

    officer is a R library that is included as extension in the following software installations:

  • oligo (extension)

    oligo is a R library that is included as extension in the following software installations:

  • oligoClasses (extension)

    oligoClasses is a R library that is included as extension in the following software installations:

  • ollama (extension)

    ollama is a that is included as extension in the following software installations:

  • ollama (more details)
    https://ollama.com

    Get up and running with large language models.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ont-tombo (extension)

    ont-tombo is a Python package that is included as extension in the following software installations:

  • ontologyIndex (extension)

    ontologyIndex is a R library that is included as extension in the following software installations:

  • oompaBase (extension)

    oompaBase is a R library that is included as extension in the following software installations:

  • oompaData (extension)

    oompaData is a R library that is included as extension in the following software installations:

  • OPARI2 (more details)
    https://www.score-p.org

    OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • openair (extension)

    openair is a R library that is included as extension in the following software installations:

  • OpenBabel (more details)
    https://openbabel.org

    Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenBLAS (more details)
    https://www.openblas.net, http://www.openblas.net

    OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Openbox (more details)
    http://openbox.org

    Highly configurable, lightweight, next-generation window manager with extensive standards support.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • openCARP (more details)
    https://opencarp.org

    openCARP is an open cardiac electrophysiology simulator for in-silico experiments.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenCV (more details)
    https://opencv.org

    OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • openCyto (extension)

    openCyto is a R library that is included as extension in the following software installations:

  • OpenEXR (more details)
    https://www.openexr.com

    OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenFOAM (more details)
    https://www.openfoam.com, https://www.openfoam.org

    OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenGL (more details)
    http://www.opengl.org

    Open Graphics Library (OpenGL) is a cross-language, cross-platform application programming interface (API) for rendering 2D and 3D vector graphics. This module is a bundle of software required for OpenGL rendering. It provides Mesa as an open-source implementation of the OpenGL specification with software rendering and AMD GPU support, libglvnd for a vendor neutral dispatch layer for rendering with both NVIDIA GPUs & Mesa, Mesa-demos for sample applications, and GLU as an computer graphics library utilizing OpenGL.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenJPEG (more details)
    https://www.openjpeg.org

    OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenMPI (more details)
    https://www.open-mpi.org

    The Open MPI Project is an open source MPI-3 implementation.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenMx (extension)

    OpenMx is a R library that is included as extension in the following software installations:

  • OpenPGM (more details)
    https://code.google.com/p/openpgm

    OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • OpenSSL (extension)

    OpenSSL is a that is included as extension in the following software installations:

  • OpenSSL (more details)
    https://www.openssl.org

    The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • openssl (extension)

    openssl is a R library that is included as extension in the following software installations:

  • opentelemetry_api (extension)

    opentelemetry_api is a Python package that is included as extension in the following software installations:

  • opentelemetry_sdk (extension)

    opentelemetry_sdk is a Python package that is included as extension in the following software installations:

  • opentelemetry_semantic_conventions (extension)

    opentelemetry_semantic_conventions is a Python package that is included as extension in the following software installations:

  • openxlsx (extension)

    openxlsx is a R library that is included as extension in the following software installations:

  • operator.tools (extension)

    operator.tools is a R library that is included as extension in the following software installations:

  • opt-einsum (extension)

    opt-einsum is a Python package that is included as extension in the following software installations:

  • opt_einsum (extension)

    opt_einsum is a Python package that is included as extension in the following software installations:

  • optextras (extension)

    optextras is a R library that is included as extension in the following software installations:

  • optim (extension)

    optim is a that is included as extension in the following software installations:

  • optimParallel (extension)

    optimParallel is a R library that is included as extension in the following software installations:

  • optimr (extension)

    optimr is a R library that is included as extension in the following software installations:

  • optimx (extension)

    optimx is a R library that is included as extension in the following software installations:

  • optmatch (extension)

    optmatch is a R library that is included as extension in the following software installations:

  • optparse (extension)

    optparse is a R library that is included as extension in the following software installations:

  • optree (more details)
    https://optree.readthedocs.io/en/latest

    Optimized PyTree Utilities

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ordinal (extension)

    ordinal is a R library that is included as extension in the following software installations:

  • org.Hs.eg.db (extension)

    org.Hs.eg.db is a R library that is included as extension in the following software installations:

  • org.Mm.eg.db (extension)

    org.Mm.eg.db is a R library that is included as extension in the following software installations:

  • org.Rn.eg.db (extension)

    org.Rn.eg.db is a R library that is included as extension in the following software installations:

  • OrganismDbi (extension)

    OrganismDbi is a R library that is included as extension in the following software installations:

  • origami (extension)

    origami is a R library that is included as extension in the following software installations:

  • orjson (extension)

    orjson is a Python package that is included as extension in the following software installations:

  • orjson (more details)
    https://github.com/ijl/orjson

    Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • oro.nifti (extension)

    oro.nifti is a R library that is included as extension in the following software installations:

  • OrthoFinder (more details)
    https://github.com/davidemms/OrthoFinder

    OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • orthopolynom (extension)

    orthopolynom is a R library that is included as extension in the following software installations:

  • Osi (more details)
    https://github.com/coin-or/Osi

    Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • osqp (extension)

    osqp is a R library that is included as extension in the following software installations:

  • OSU-Micro-Benchmarks (more details)
    https://mvapich.cse.ohio-state.edu/benchmarks

    OSU Micro-Benchmarks

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • OTF2 (more details)
    https://www.score-p.org

    The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • outliers (extension)

    outliers is a R library that is included as extension in the following software installations:

  • OUTRIDER (extension)

    OUTRIDER is a R library that is included as extension in the following software installations:

  • overrides (extension)

    overrides is a Python package that is included as extension in the following software installations:

  • OWSLib (extension)

    OWSLib is a Python package that is included as extension in the following software installations:

  • p (extension)

    p is a R library that is included as extension in the following software installations:

  • p11-kit (more details)
    https://p11-glue.freedesktop.org/p11-kit.html

    Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • p7zip (more details)
    https://github.com/p7zip-project/p7zip

    p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Package::Constants (extension)

    Package::Constants is a Perl module that is included as extension in the following software installations:

  • Package::DeprecationManager (extension)

    Package::DeprecationManager is a Perl module that is included as extension in the following software installations:

  • Package::Stash (extension)

    Package::Stash is a Perl module that is included as extension in the following software installations:

  • Package::Stash::XS (extension)

    Package::Stash::XS is a Perl module that is included as extension in the following software installations:

  • packaging (extension)

    packaging is a Python package that is included as extension in the following software installations:

  • packrat (extension)

    packrat is a R library that is included as extension in the following software installations:

  • pacman (extension)

    pacman is a R library that is included as extension in the following software installations:

  • PadWalker (extension)

    PadWalker is a Perl module that is included as extension in the following software installations:

  • palettable (extension)

    palettable is a Python package that is included as extension in the following software installations:

  • pammtools (extension)

    pammtools is a R library that is included as extension in the following software installations:

  • pamqp (extension)

    pamqp is a Python package that is included as extension in the following software installations:

  • pamr (extension)

    pamr is a R library that is included as extension in the following software installations:

  • pan (extension)

    pan is a R library that is included as extension in the following software installations:

  • pandas (extension)

    pandas is a Python package that is included as extension in the following software installations:

  • pander (extension)

    pander is a R library that is included as extension in the following software installations:

  • Pandoc (more details)
    https://pandoc.org

    If you need to convert files from one markup format into another, pandoc is your swiss-army knife

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pandocfilters (extension)

    pandocfilters is a Python package that is included as extension in the following software installations:

  • Pango (more details)
    https://www.pango.org

    Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PAPI (more details)
    https://icl.cs.utk.edu/projects/papi

    PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • parallel (more details)
    https://savannah.gnu.org/projects/parallel

    parallel: Build and execute shell commands in parallel

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Parallel::ForkManager (extension)

    Parallel::ForkManager is a Perl module that is included as extension in the following software installations:

  • parallelDist (extension)

    parallelDist is a R library that is included as extension in the following software installations:

  • parallelly (extension)

    parallelly is a R library that is included as extension in the following software installations:

  • parallelMap (extension)

    parallelMap is a R library that is included as extension in the following software installations:

  • parameterized (more details)
    https://github.com/wolever/parameterized

    Parameterized testing with any Python test framework

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ParamHelpers (extension)

    ParamHelpers is a R library that is included as extension in the following software installations:

  • paramiko (extension)

    paramiko is a Python package that is included as extension in the following software installations:

  • paramiko (more details)
    https://paramiko.org

    Paramiko is a pure-Python (3.6+) implementation of the SSHv2 protocol, providing both client and server functionality. It provides the foundation for the high-level SSH library Fabric, which is what we recommend you use for common client use-cases such as running remote shell commands or transferring files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Params::Check (extension)

    Params::Check is a Perl module that is included as extension in the following software installations:

  • Params::Util (extension)

    Params::Util is a Perl module that is included as extension in the following software installations:

  • Params::Validate (extension)

    Params::Validate is a Perl module that is included as extension in the following software installations:

  • Params::ValidationCompiler (extension)

    Params::ValidationCompiler is a Perl module that is included as extension in the following software installations:

  • Paraver (more details)
    https://tools.bsc.es/paraver

    A very powerful performance visualization and analysis tool based on traces that can be used to analyse any information that is expressed on its input trace format. Traces for parallel MPI, OpenMP and other programs can be genereated with Extrae.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ParaView (more details)
    https://www.paraview.org

    ParaView is a scientific parallel visualizer.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • parent (extension)

    parent is a Perl module that is included as extension in the following software installations:

  • ParMETIS (more details)
    http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview

    ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Parse::RecDescent (extension)

    Parse::RecDescent is a Perl module that is included as extension in the following software installations:

  • Parse::Yapp (extension)

    Parse::Yapp is a Perl module that is included as extension in the following software installations:

  • parsedate (extension)

    parsedate is a R library that is included as extension in the following software installations:

  • parso (extension)

    parso is a Python package that is included as extension in the following software installations:

  • partd (extension)

    partd is a Python package that is included as extension in the following software installations:

  • party (extension)

    party is a R library that is included as extension in the following software installations:

  • partykit (extension)

    partykit is a R library that is included as extension in the following software installations:

  • pastecs (extension)

    pastecs is a R library that is included as extension in the following software installations:

  • pastel (extension)

    pastel is a Python package that is included as extension in the following software installations:

  • patchelf (more details)
    https://github.com/NixOS/patchelf

    PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • patchwork (extension)

    patchwork is a R library that is included as extension in the following software installations:

  • Path::Tiny (extension)

    Path::Tiny is a Perl module that is included as extension in the following software installations:

  • pathlib2 (extension)

    pathlib2 is a Python package that is included as extension in the following software installations:

  • pathname2 (extension)

    pathname2 is a that is included as extension in the following software installations:

  • pathspec (extension)

    pathspec is a Python package that is included as extension in the following software installations:

  • pathview (extension)

    pathview is a R library that is included as extension in the following software installations:

  • patsy (extension)

    patsy is a Python package that is included as extension in the following software installations:

  • pbapply (extension)

    pbapply is a R library that is included as extension in the following software installations:

  • pbivnorm (extension)

    pbivnorm is a R library that is included as extension in the following software installations:

  • pbkrtest (extension)

    pbkrtest is a R library that is included as extension in the following software installations:

  • pbmcapply (extension)

    pbmcapply is a R library that is included as extension in the following software installations:

  • pbr (extension)

    pbr is a Python package that is included as extension in the following software installations:

  • pbs_installer (extension)

    pbs_installer is a Python package that is included as extension in the following software installations:

  • PCAmatchR (extension)

    PCAmatchR is a R library that is included as extension in the following software installations:

  • pcaMethods (extension)

    pcaMethods is a R library that is included as extension in the following software installations:

  • pcaPP (extension)

    pcaPP is a R library that is included as extension in the following software installations:

  • PCRE (more details)
    https://www.pcre.org

    The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PCRE2 (more details)
    https://www.pcre.org

    The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PDAL (more details)
    https://pdal.io

    PDAL is Point Data Abstraction Library. It is a C/C++ open source library and applications for translating and processing point cloud data. It is not limited to LiDAR data, although the focus and impetus for many of the tools in the library have their origins in LiDAR.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PDF::API2 (extension)

    PDF::API2 is a Perl module that is included as extension in the following software installations:

  • pdp (extension)

    pdp is a R library that is included as extension in the following software installations:

  • PDT (more details)
    https://www.cs.uoregon.edu/research/pdt

    Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PearsonDS (extension)

    PearsonDS is a R library that is included as extension in the following software installations:

  • pec (extension)

    pec is a R library that is included as extension in the following software installations:

  • penalized (extension)

    penalized is a R library that is included as extension in the following software installations:

  • penfa (extension)

    penfa is a R library that is included as extension in the following software installations:

  • peperr (extension)

    peperr is a R library that is included as extension in the following software installations:

  • performance (extension)

    performance is a R library that is included as extension in the following software installations:

  • Perl (more details)
    https://www.perl.org

    Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Perl-bundle-CPAN (more details)
    https://www.perl.org

    A set of common packages from CPAN

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Perl::OSType (extension)

    Perl::OSType is a Perl module that is included as extension in the following software installations:

  • Perl::PrereqScanner (extension)

    Perl::PrereqScanner is a Perl module that is included as extension in the following software installations:

  • PerlIO::utf8_strict (extension)

    PerlIO::utf8_strict is a Perl module that is included as extension in the following software installations:

  • perm (extension)

    perm is a R library that is included as extension in the following software installations:

  • PermAlgo (extension)

    PermAlgo is a R library that is included as extension in the following software installations:

  • permute (extension)

    permute is a R library that is included as extension in the following software installations:

  • PETSc (more details)
    https://www.mcs.anl.gov/petsc

    PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • petsc4py (more details)
    https://gitlab.com/petsc/petsc

    petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pexpect (extension)

    pexpect is a Python package that is included as extension in the following software installations:

  • PFAM.db (extension)

    PFAM.db is a R library that is included as extension in the following software installations:

  • PGPLOT (more details)
    https://sites.astro.caltech.edu/~tjp/pgplot

    The PGPLOT Graphics Subroutine Library is a Fortran- or C-callable, device-independent graphics package for making simple scientific graphs. It is intended for making graphical images of publication quality with minimum effort on the part of the user. For most applications, the program can be device-independent, and the output can be directed to the appropriate device at run time.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pgsu (extension)

    pgsu is a Python package that is included as extension in the following software installations:

  • phangorn (extension)

    phangorn is a R library that is included as extension in the following software installations:

  • pheatmap (extension)

    pheatmap is a R library that is included as extension in the following software installations:

  • phylobase (extension)

    phylobase is a R library that is included as extension in the following software installations:

  • phyloseq (extension)

    phyloseq is a R library that is included as extension in the following software installations:

  • phytools (extension)

    phytools is a R library that is included as extension in the following software installations:

  • pickleshare (extension)

    pickleshare is a Python package that is included as extension in the following software installations:

  • picom (more details)
    https://github.com/yshui/picom

    A lightweight compositor for X11, successor to compton, offering shadows, transparency, and vsync.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pigz (more details)
    https://zlib.net/pigz

    pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pillar (extension)

    pillar is a R library that is included as extension in the following software installations:

  • Pillow (more details)
    https://pillow.readthedocs.org

    Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Pillow-SIMD (more details)
    https://github.com/uploadcare/pillow-simd

    Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pim (extension)

    pim is a R library that is included as extension in the following software installations:

  • pinfsc50 (extension)

    pinfsc50 is a R library that is included as extension in the following software installations:

  • Pint (extension)

    Pint is a Python package that is included as extension in the following software installations:

  • Pint (more details)
    https://github.com/hgrecco/pint

    Pint is a Python package to define, operate and manipulate physical quantities: the product of a numerical value and a unit of measurement. It allows arithmetic operations between them and conversions from and to different units.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Pint-Pandas (extension)

    Pint-Pandas is a Python package that is included as extension in the following software installations:

  • pip (extension)

    pip is a Python package that is included as extension in the following software installations:

  • pixman (more details)
    http://www.pixman.org

    Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pixmap (extension)

    pixmap is a R library that is included as extension in the following software installations:

  • pkg-config (more details)
    https://www.freedesktop.org/wiki/Software/pkg-config

    pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c pkg-config --libs --cflags glib-2.0 for instance, rather than hard-coding values on where to find glib (or other libraries).

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pkgbuild (extension)

    pkgbuild is a R library that is included as extension in the following software installations:

  • pkgconf (more details)
    https://github.com/pkgconf/pkgconf

    pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pkgconfig (extension)

    pkgconfig is a R library that is included as extension in the following software installations:

  • pkgconfig (more details)
    https://github.com/matze/pkgconfig

    pkgconfig is a Python module to interface with the pkg-config command line tool

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pkgdown (extension)

    pkgdown is a R library that is included as extension in the following software installations:

  • pkginfo (extension)

    pkginfo is a Python package that is included as extension in the following software installations:

  • pkgload (extension)

    pkgload is a R library that is included as extension in the following software installations:

  • pkgmaker (extension)

    pkgmaker is a R library that is included as extension in the following software installations:

  • PKI (extension)

    PKI is a R library that is included as extension in the following software installations:

  • plac (extension)

    plac is a Python package that is included as extension in the following software installations:

  • platformdirs (extension)

    platformdirs is a Python package that is included as extension in the following software installations:

  • plogr (extension)

    plogr is a R library that is included as extension in the following software installations:

  • plot3D (extension)

    plot3D is a R library that is included as extension in the following software installations:

  • plot3Drgl (extension)

    plot3Drgl is a R library that is included as extension in the following software installations:

  • plotext (extension)

    plotext is a Python package that is included as extension in the following software installations:

  • plotly (extension)

    plotly is a R library that is included as extension in the following software installations:

  • plotly (extension)

    plotly is a Python package that is included as extension in the following software installations:

  • plotly.py (more details)
    https://plot.ly/python

    An open-source, interactive graphing library for Python

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • plotmo (extension)

    plotmo is a R library that is included as extension in the following software installations:

  • plotrix (extension)

    plotrix is a R library that is included as extension in the following software installations:

  • pls (extension)

    pls is a R library that is included as extension in the following software installations:

  • pluggy (extension)

    pluggy is a Python package that is included as extension in the following software installations:

  • PLUMED (more details)
    https://www.plumed.org

    PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • plumpy (extension)

    plumpy is a Python package that is included as extension in the following software installations:

  • plumpy (more details)
    https://python.org

    Bundle of Python packages required to run plumpy: A python workflows library that supports writing Processes with a well defined set of inputs and outputs that can be strung together.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PLY (more details)
    https://www.dabeaz.com/ply

    PLY is yet another implementation of lex and yacc for Python.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ply (extension)

    ply is a Python package that is included as extension in the following software installations:

  • plyr (extension)

    plyr is a R library that is included as extension in the following software installations:

  • plyranges (extension)

    plyranges is a R library that is included as extension in the following software installations:

  • PMA (extension)

    PMA is a R library that is included as extension in the following software installations:

  • PMIx (more details)
    https://pmix.org

    Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pmp (extension)

    pmp is a R library that is included as extension in the following software installations:

  • PnetCDF (more details)
    https://parallel-netcdf.github.io

    Parallel netCDF: A Parallel I/O Library for NetCDF File Access

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • png (extension)

    png is a R library that is included as extension in the following software installations:

  • Pod::Elemental (extension)

    Pod::Elemental is a Perl module that is included as extension in the following software installations:

  • Pod::Escapes (extension)

    Pod::Escapes is a Perl module that is included as extension in the following software installations:

  • Pod::Eventual (extension)

    Pod::Eventual is a Perl module that is included as extension in the following software installations:

  • Pod::LaTeX (extension)

    Pod::LaTeX is a Perl module that is included as extension in the following software installations:

  • Pod::Man (extension)

    Pod::Man is a Perl module that is included as extension in the following software installations:

  • Pod::Parser (extension)

    Pod::Parser is a Perl module that is included as extension in the following software installations:

  • Pod::Plainer (extension)

    Pod::Plainer is a Perl module that is included as extension in the following software installations:

  • Pod::POM (extension)

    Pod::POM is a Perl module that is included as extension in the following software installations:

  • Pod::Simple (extension)

    Pod::Simple is a Perl module that is included as extension in the following software installations:

  • Pod::Weaver (extension)

    Pod::Weaver is a Perl module that is included as extension in the following software installations:

  • poetry (extension)

    poetry is a Python package that is included as extension in the following software installations:

  • poetry (more details)
    https://python-poetry.org

    Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • poetry-core (extension)

    poetry-core is a Python package that is included as extension in the following software installations:

  • poetry-plugin-export (extension)

    poetry-plugin-export is a Python package that is included as extension in the following software installations:

  • poetry_core (extension)

    poetry_core is a Python package that is included as extension in the following software installations:

  • poetry_plugin_export (extension)

    poetry_plugin_export is a Python package that is included as extension in the following software installations:

  • PoissonSeq (extension)

    PoissonSeq is a R library that is included as extension in the following software installations:

  • poLCA (extension)

    poLCA is a R library that is included as extension in the following software installations:

  • polspline (extension)

    polspline is a R library that is included as extension in the following software installations:

  • Polychrome (extension)

    Polychrome is a R library that is included as extension in the following software installations:

  • polyclip (extension)

    polyclip is a R library that is included as extension in the following software installations:

  • polycor (extension)

    polycor is a R library that is included as extension in the following software installations:

  • polyester (extension)

    polyester is a R library that is included as extension in the following software installations:

  • polynom (extension)

    polynom is a R library that is included as extension in the following software installations:

  • pooch (extension)

    pooch is a Python package that is included as extension in the following software installations:

  • portpicker (extension)

    portpicker is a Python package that is included as extension in the following software installations:

  • posterior (extension)

    posterior is a R library that is included as extension in the following software installations:

  • PostgreSQL (more details)
    https://www.postgresql.org

    PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • poweRlaw (extension)

    poweRlaw is a R library that is included as extension in the following software installations:

  • ppcor (extension)

    ppcor is a R library that is included as extension in the following software installations:

  • PPI (extension)

    PPI is a Perl module that is included as extension in the following software installations:

  • prabclus (extension)

    prabclus is a R library that is included as extension in the following software installations:

  • pracma (extension)

    pracma is a R library that is included as extension in the following software installations:

  • praise (extension)

    praise is a R library that is included as extension in the following software installations:

  • pre-commit (extension)

    pre-commit is a Python package that is included as extension in the following software installations:

  • pre-commit (more details)
    https://pre-commit.com

    A framework for managing and maintaining multi-language pre-commit hooks. Git hook scripts are useful for identifying simple issues before submission to code review. We run our hooks on every commit to automatically point out issues in code such as missing semicolons, trailing whitespace, and debug statements. By pointing these issues out before code review, this allows a code reviewer to focus on the architecture of a change while not wasting time with trivial style nitpicks.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • prefixed (extension)

    prefixed is a Python package that is included as extension in the following software installations:

  • preprocessCore (extension)

    preprocessCore is a R library that is included as extension in the following software installations:

  • PresenceAbsence (extension)

    PresenceAbsence is a R library that is included as extension in the following software installations:

  • preseqR (extension)

    preseqR is a R library that is included as extension in the following software installations:

  • prettyGraphs (extension)

    prettyGraphs is a R library that is included as extension in the following software installations:

  • prettyunits (extension)

    prettyunits is a R library that is included as extension in the following software installations:

  • princurve (extension)

    princurve is a R library that is included as extension in the following software installations:

  • printproto (extension)

    printproto is a that is included as extension in the following software installations:

  • pROC (extension)

    pROC is a R library that is included as extension in the following software installations:

  • processx (extension)

    processx is a R library that is included as extension in the following software installations:

  • prodlim (extension)

    prodlim is a R library that is included as extension in the following software installations:

  • profileModel (extension)

    profileModel is a R library that is included as extension in the following software installations:

  • proftools (extension)

    proftools is a R library that is included as extension in the following software installations:

  • profvis (extension)

    profvis is a R library that is included as extension in the following software installations:

  • progress (extension)

    progress is a R library that is included as extension in the following software installations:

  • progressr (extension)

    progressr is a R library that is included as extension in the following software installations:

  • PROJ (more details)
    https://proj.org

    Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • projpred (extension)

    projpred is a R library that is included as extension in the following software installations:

  • pRoloc (extension)

    pRoloc is a R library that is included as extension in the following software installations:

  • pRolocdata (extension)

    pRolocdata is a R library that is included as extension in the following software installations:

  • pRolocGUI (extension)

    pRolocGUI is a R library that is included as extension in the following software installations:

  • prometheus_client (extension)

    prometheus_client is a Python package that is included as extension in the following software installations:

  • promises (extension)

    promises is a R library that is included as extension in the following software installations:

  • prompt_toolkit (extension)

    prompt_toolkit is a Python package that is included as extension in the following software installations:

  • ProtGenerics (extension)

    ProtGenerics is a R library that is included as extension in the following software installations:

  • proto (extension)

    proto is a R library that is included as extension in the following software installations:

  • proto-plus (extension)

    proto-plus is a Python package that is included as extension in the following software installations:

  • protobuf (more details)
    https://github.com/protocolbuffers/protobuf

    Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • protobuf-python (more details)
    https://github.com/google/protobuf

    Python Protocol Buffers runtime library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • protolite (extension)

    protolite is a R library that is included as extension in the following software installations:

  • prov (extension)

    prov is a Python package that is included as extension in the following software installations:

  • proxy (extension)

    proxy is a R library that is included as extension in the following software installations:

  • proxyC (extension)

    proxyC is a R library that is included as extension in the following software installations:

  • PRROC (extension)

    PRROC is a R library that is included as extension in the following software installations:

  • PRRTE (more details)
    https://docs.prrte.org

    PRRTE is the PMIx Reference RunTime Environment

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pryr (extension)

    pryr is a R library that is included as extension in the following software installations:

  • ps (extension)

    ps is a R library that is included as extension in the following software installations:

  • PSCBS (extension)

    PSCBS is a R library that is included as extension in the following software installations:

  • pscl (extension)

    pscl is a R library that is included as extension in the following software installations:

  • PSMatch (extension)

    PSMatch is a R library that is included as extension in the following software installations:

  • pspline (extension)

    pspline is a R library that is included as extension in the following software installations:

  • psutil (extension)

    psutil is a Python package that is included as extension in the following software installations:

  • psutil (more details)
    https://github.com/giampaolo/psutil

    A cross-platform process and system utilities module for Python

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • psych (extension)

    psych is a R library that is included as extension in the following software installations:

  • psycopg (extension)

    psycopg is a Python package that is included as extension in the following software installations:

  • psycopg (more details)
    https://psycopg.org

    Psycopg is the most popular PostgreSQL adapter for the Python programming language.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • psycopg2 (extension)

    psycopg2 is a Python package that is included as extension in the following software installations:

  • psycopg2 (more details)
    https://psycopg.org

    Psycopg is the most popular PostgreSQL adapter for the Python programming language.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ptyprocess (extension)

    ptyprocess is a Python package that is included as extension in the following software installations:

  • public_suffix (extension)

    public_suffix is a that is included as extension in the following software installations:

  • Publish (extension)

    Publish is a R library that is included as extension in the following software installations:

  • pugixml (more details)
    https://pugixml.org

    pugixml is a light-weight C++ XML processing library

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PuLP (more details)
    https://github.com/coin-or/pulp

    PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pulp (extension)

    pulp is a Python package that is included as extension in the following software installations:

  • PuLP (extension)

    PuLP is a Python package that is included as extension in the following software installations:

  • pulsar (extension)

    pulsar is a R library that is included as extension in the following software installations:

  • pure_eval (extension)

    pure_eval is a Python package that is included as extension in the following software installations:

  • PureCN (extension)

    PureCN is a R library that is included as extension in the following software installations:

  • purrr (extension)

    purrr is a R library that is included as extension in the following software installations:

  • pusher-client (extension)

    pusher-client is a that is included as extension in the following software installations:

  • pvclust (extension)

    pvclust is a R library that is included as extension in the following software installations:

  • pwalign (extension)

    pwalign is a R library that is included as extension in the following software installations:

  • PWEALL (extension)

    PWEALL is a R library that is included as extension in the following software installations:

  • py (extension)

    py is a Python package that is included as extension in the following software installations:

  • py-cpuinfo (more details)
    https://github.com/workhorsy/py-cpuinfo

    py-cpuinfo gets CPU info with pure Python.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • py-expression-eval (extension)

    py-expression-eval is a Python package that is included as extension in the following software installations:

  • py_expression_eval (extension)

    py_expression_eval is a Python package that is included as extension in the following software installations:

  • pyarrow (extension)

    pyarrow is a Python package that is included as extension in the following software installations:

  • pyasn1 (extension)

    pyasn1 is a Python package that is included as extension in the following software installations:

  • pyasn1-modules (extension)

    pyasn1-modules is a Python package that is included as extension in the following software installations:

  • pyasn1_modules (extension)

    pyasn1_modules is a Python package that is included as extension in the following software installations:

  • pybind11 (more details)
    https://pybind11.readthedocs.io

    pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pybtex (extension)

    pybtex is a Python package that is included as extension in the following software installations:

  • PyCairo (more details)
    https://pycairo.readthedocs.io

    Python bindings for the cairo library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyCifRW (extension)

    PyCifRW is a Python package that is included as extension in the following software installations:

  • pycparser (extension)

    pycparser is a Python package that is included as extension in the following software installations:

  • pycryptodome (extension)

    pycryptodome is a Python package that is included as extension in the following software installations:

  • pydantic (extension)

    pydantic is a Python package that is included as extension in the following software installations:

  • pydantic (more details)
    https://github.com/samuelcolvin/pydantic

    Data validation and settings management using Python type hinting.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pydantic-settings (extension)

    pydantic-settings is a Python package that is included as extension in the following software installations:

  • pydantic_core (extension)

    pydantic_core is a Python package that is included as extension in the following software installations:

  • pydash (extension)

    pydash is a Python package that is included as extension in the following software installations:

  • pydevtool (extension)

    pydevtool is a Python package that is included as extension in the following software installations:

  • pydot (extension)

    pydot is a Python package that is included as extension in the following software installations:

  • pydot (more details)
    https://github.com/pydot/pydot

    Python interface to Graphviz's Dot language.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pyepsg (extension)

    pyepsg is a Python package that is included as extension in the following software installations:

  • pyerfa (extension)

    pyerfa is a Python package that is included as extension in the following software installations:

  • pyevtk (extension)

    pyevtk is a Python package that is included as extension in the following software installations:

  • PyEVTK (more details)
    https://github.com/paulo-herrera/PyEVTK

    EVTK (Export VTK) package allows exporting data to binary VTK files for visualization and data analysis with any of the visualization packages that support VTK files

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pyfaidx (extension)

    pyfaidx is a Python package that is included as extension in the following software installations:

  • pyfaidx (more details)
    https://pypi.python.org/pypi/pyfaidx

    pyfaidx: efficient pythonic random access to fasta subsequences

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Pygments (extension)

    Pygments is a Python package that is included as extension in the following software installations:

  • Pygments (more details)
    https://pygments.org

    Generic syntax highlighter suitable for use in code hosting, forums, wikis or other applications that need to prettify source code.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyGObject (more details)
    https://pygobject.readthedocs.io

    PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pykdtree (extension)

    pykdtree is a Python package that is included as extension in the following software installations:

  • pylev (extension)

    pylev is a Python package that is included as extension in the following software installations:

  • pymatgen (extension)

    pymatgen is a Python package that is included as extension in the following software installations:

  • pymatgen (more details)
    https://pymatgen.org

    Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pyMBE (extension)

    pyMBE is a Python package that is included as extension in the following software installations:

  • pyMBE (more details)

    pyMBE: the Python-based Molecule Builder for ESPResSo pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pymongo (extension)

    pymongo is a Python package that is included as extension in the following software installations:

  • PyMySQL (extension)

    PyMySQL is a Python package that is included as extension in the following software installations:

  • PyNaCl (extension)

    PyNaCl is a Python package that is included as extension in the following software installations:

  • pynndescent (extension)

    pynndescent is a Python package that is included as extension in the following software installations:

  • pynrrd (extension)

    pynrrd is a Python package that is included as extension in the following software installations:

  • PyOpenGL (extension)

    PyOpenGL is a Python package that is included as extension in the following software installations:

  • PyOpenGL (more details)
    http://pyopengl.sourceforge.net

    PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyOpenGL-accelerate (extension)

    PyOpenGL-accelerate is a Python package that is included as extension in the following software installations:

  • pyparsing (extension)

    pyparsing is a Python package that is included as extension in the following software installations:

  • pyproj (more details)
    https://pyproj4.github.io/pyproj

    Python interface to PROJ4 library for cartographic transformations

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pyproject-metadata (extension)

    pyproject-metadata is a Python package that is included as extension in the following software installations:

  • pyproject_hooks (extension)

    pyproject_hooks is a Python package that is included as extension in the following software installations:

  • pyproject_metadata (extension)

    pyproject_metadata is a Python package that is included as extension in the following software installations:

  • PyPubSub (extension)

    PyPubSub is a Python package that is included as extension in the following software installations:

  • PyQt-builder (extension)

    PyQt-builder is a Python package that is included as extension in the following software installations:

  • PyQt-builder (more details)
    http://www.example.com

    PyQt-builder is the PEP 517 compliant build system for PyQt and projects that extend PyQt. It extends the SIP build system and uses Qt’s qmake to perform the actual compilation and installation of extension modules.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyQt5 (extension)

    PyQt5 is a that is included as extension in the following software installations:

  • PyQt5 (more details)
    https://www.riverbankcomputing.com/software/pyqt

    PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyQt5_sip (extension)

    PyQt5_sip is a that is included as extension in the following software installations:

  • PyQtWebEngine (extension)

    PyQtWebEngine is a that is included as extension in the following software installations:

  • pyregion (extension)

    pyregion is a Python package that is included as extension in the following software installations:

  • pyrsistent (extension)

    pyrsistent is a Python package that is included as extension in the following software installations:

  • Pysam (more details)
    https://github.com/pysam-developers/pysam

    Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pyshp (extension)

    pyshp is a Python package that is included as extension in the following software installations:

  • PySocks (extension)

    PySocks is a Python package that is included as extension in the following software installations:

  • pystencils (extension)

    pystencils is a Python package that is included as extension in the following software installations:

  • pystencils (more details)
    https://pycodegen.pages.i10git.cs.fau.de/pystencils

    pystencils uses sympy to define stencil operations, that can be executed on numpy arrays

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyTables (more details)
    https://www.pytables.org

    PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browsing, processing and searching very large amounts of data. One important feature of PyTables is that it optimizes memory and disk resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as relational or object oriented databases.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pytest (extension)

    pytest is a Python package that is included as extension in the following software installations:

  • pytest (more details)
    https://docs.pytest.org/en/latest

    The pytest framework makes it easy to write small, readable tests, and can scale to support complex functional testing for applications and libraries.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pytest-arraydiff (extension)

    pytest-arraydiff is a Python package that is included as extension in the following software installations:

  • pytest-astropy (extension)

    pytest-astropy is a Python package that is included as extension in the following software installations:

  • pytest-astropy-header (extension)

    pytest-astropy-header is a Python package that is included as extension in the following software installations:

  • pytest-cov (extension)

    pytest-cov is a Python package that is included as extension in the following software installations:

  • pytest-doctestplus (extension)

    pytest-doctestplus is a Python package that is included as extension in the following software installations:

  • pytest-filter-subpackage (extension)

    pytest-filter-subpackage is a Python package that is included as extension in the following software installations:

  • pytest-flakefinder (more details)
    https://github.com/dropbox/pytest-flakefinder

    Runs tests multiple times to expose flakiness.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pytest-mock (extension)

    pytest-mock is a Python package that is included as extension in the following software installations:

  • pytest-remotedata (extension)

    pytest-remotedata is a Python package that is included as extension in the following software installations:

  • pytest-rerunfailures (more details)
    https://github.com/pytest-dev/pytest-rerunfailures

    pytest plugin to re-run tests to eliminate flaky failures.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pytest-shard (more details)
    https://github.com/AdamGleave/pytest-shard

    pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pytest-subtests (more details)
    https://github.com/pytest-dev/pytest-subtests

    unittest subTest() support and subtests fixture.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pytest-xdist (extension)

    pytest-xdist is a Python package that is included as extension in the following software installations:

  • pytest_mock (extension)

    pytest_mock is a Python package that is included as extension in the following software installations:

  • Python (more details)
    https://python.org

    Python is a programming language that lets you work more quickly and integrate your systems more effectively.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Python-bundle-PyPI (more details)
    https://python.org

    Bundle of Python packages from PyPI

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • python-casacore (extension)

    python-casacore is a Python package that is included as extension in the following software installations:

  • python-casacore (more details)
    https://casacore.github.io/python-casacore/#

    Python-casacore is a set of Python bindings for casacore, a c++ library used in radio astronomy. Python-casacore replaces the old pyrap.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • python-crfsuite (extension)

    python-crfsuite is a Python package that is included as extension in the following software installations:

  • python-dateutil (extension)

    python-dateutil is a Python package that is included as extension in the following software installations:

  • python-dotenv (extension)

    python-dotenv is a Python package that is included as extension in the following software installations:

  • python-isal (more details)
    https://github.com/pycompression/python-isal

    Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • python-json-logger (extension)

    python-json-logger is a Python package that is included as extension in the following software installations:

  • python-Levenshtein (extension)

    python-Levenshtein is a Python package that is included as extension in the following software installations:

  • python-memcached (extension)

    python-memcached is a Python package that is included as extension in the following software installations:

  • python-xxhash (more details)
    https://github.com/ifduyue/python-xxhash

    xxhash is a Python binding for the xxHash library by Yann Collet.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pythran (extension)

    pythran is a Python package that is included as extension in the following software installations:

  • pytoml (extension)

    pytoml is a Python package that is included as extension in the following software installations:

  • PyTorch (more details)
    https://pytorch.org

    Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pytray (extension)

    pytray is a Python package that is included as extension in the following software installations:

  • pytz (extension)

    pytz is a Python package that is included as extension in the following software installations:

  • pyvo (extension)

    pyvo is a Python package that is included as extension in the following software installations:

  • PyVO (more details)
    https://pyvo.readthedocs.io

    PyVO lets you find and retrieve astronomical data available from archives that support standard IVOA virtual observatory service protocols.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyYAML (more details)
    https://github.com/yaml/pyyaml

    PyYAML is a YAML parser and emitter for the Python programming language.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • PyZMQ (more details)
    https://www.zeromq.org/bindings:python

    Python bindings for ZeroMQ

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • pyzstd (more details)
    https://github.com/Rogdham/pyzstd

    Pyzstd module provides classes and functions for compressing and decompressing data, using Facebook's Zstandard (or zstd as short name) algorithm. The API style is similar to Python's bz2/lzma/zlib modules.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • qap (extension)

    qap is a R library that is included as extension in the following software installations:

  • QDNAseq (extension)

    QDNAseq is a R library that is included as extension in the following software installations:

  • QFeatures (extension)

    QFeatures is a R library that is included as extension in the following software installations:

  • qgam (extension)

    qgam is a R library that is included as extension in the following software installations:

  • qgraph (extension)

    qgraph is a R library that is included as extension in the following software installations:

  • Qhull (more details)
    http://www.qhull.org

    Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • qlcMatrix (extension)

    qlcMatrix is a R library that is included as extension in the following software installations:

  • qqconf (extension)

    qqconf is a R library that is included as extension in the following software installations:

  • qqman (extension)

    qqman is a R library that is included as extension in the following software installations:

  • qrng (extension)

    qrng is a R library that is included as extension in the following software installations:

  • qrnn (extension)

    qrnn is a R library that is included as extension in the following software installations:

  • qrupdate (more details)
    https://sourceforge.net/projects/qrupdate

    qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • QScintilla (more details)
    https://www.riverbankcomputing.com/software/qscintilla

    QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Qt5 (more details)
    https://qt.io

    Qt is a comprehensive cross-platform C++ application framework.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Qt6 (more details)
    https://qt.io

    Qt is a comprehensive cross-platform C++ application framework.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • quadprog (extension)

    quadprog is a R library that is included as extension in the following software installations:

  • quanteda (extension)

    quanteda is a R library that is included as extension in the following software installations:

  • quantmod (extension)

    quantmod is a R library that is included as extension in the following software installations:

  • quantreg (extension)

    quantreg is a R library that is included as extension in the following software installations:

  • quantsmooth (extension)

    quantsmooth is a R library that is included as extension in the following software installations:

  • QuantumESPRESSO (more details)
    https://www.quantum-espresso.org

    Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • querystring_parser (extension)

    querystring_parser is a Python package that is included as extension in the following software installations:

  • questionr (extension)

    questionr is a R library that is included as extension in the following software installations:

  • QuickJSR (extension)

    QuickJSR is a R library that is included as extension in the following software installations:

  • qvalue (extension)

    qvalue is a R library that is included as extension in the following software installations:

  • R (more details)
    https://www.r-project.org

    R is a free software environment for statistical computing and graphics.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • R-bundle-Bioconductor (more details)
    https://bioconductor.org

    Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • R-bundle-CRAN (more details)
    https://www.r-project.org

    Bundle of R packages from CRAN

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • R.cache (extension)

    R.cache is a R library that is included as extension in the following software installations:

  • R.devices (extension)

    R.devices is a R library that is included as extension in the following software installations:

  • R.filesets (extension)

    R.filesets is a R library that is included as extension in the following software installations:

  • R.huge (extension)

    R.huge is a R library that is included as extension in the following software installations:

  • R.matlab (extension)

    R.matlab is a R library that is included as extension in the following software installations:

  • R.methodsS3 (extension)

    R.methodsS3 is a R library that is included as extension in the following software installations:

  • R.oo (extension)

    R.oo is a R library that is included as extension in the following software installations:

  • R.rsp (extension)

    R.rsp is a R library that is included as extension in the following software installations:

  • R.utils (extension)

    R.utils is a R library that is included as extension in the following software installations:

  • r2rtf (extension)

    r2rtf is a R library that is included as extension in the following software installations:

  • R2WinBUGS (extension)

    R2WinBUGS is a R library that is included as extension in the following software installations:

  • R6 (extension)

    R6 is a R library that is included as extension in the following software installations:

  • rack (extension)

    rack is a that is included as extension in the following software installations:

  • rack-protection (extension)

    rack-protection is a that is included as extension in the following software installations:

  • rack-test (extension)

    rack-test is a that is included as extension in the following software installations:

  • ragg (extension)

    ragg is a R library that is included as extension in the following software installations:

  • rainbow (extension)

    rainbow is a R library that is included as extension in the following software installations:

  • random (extension)

    random is a R library that is included as extension in the following software installations:

  • randomcoloR (extension)

    randomcoloR is a R library that is included as extension in the following software installations:

  • randomForest (extension)

    randomForest is a R library that is included as extension in the following software installations:

  • randomForestSRC (extension)

    randomForestSRC is a R library that is included as extension in the following software installations:

  • randtoolbox (extension)

    randtoolbox is a R library that is included as extension in the following software installations:

  • rangeModelMetadata (extension)

    rangeModelMetadata is a R library that is included as extension in the following software installations:

  • ranger (extension)

    ranger is a R library that is included as extension in the following software installations:

  • RANN (extension)

    RANN is a R library that is included as extension in the following software installations:

  • rapidfuzz (extension)

    rapidfuzz is a Python package that is included as extension in the following software installations:

  • RapidJSON (more details)
    https://rapidjson.org

    A fast JSON parser/generator for C++ with both SAX/DOM style API

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • rapidjsonr (extension)

    rapidjsonr is a R library that is included as extension in the following software installations:

  • rappdirs (extension)

    rappdirs is a R library that is included as extension in the following software installations:

  • Raptor (more details)
    https://librdf.org/raptor

    Set of parsers and serializers that generate Resource Description Framework (RDF) triples by parsing syntaxes or serialize the triples into a syntax.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • rARPACK (extension)

    rARPACK is a R library that is included as extension in the following software installations:

  • Rasqal (more details)
    hhttps://librdf.org/rasqal

    A library handling RDF query syntaxes, construction and execution

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • raster (extension)

    raster is a R library that is included as extension in the following software installations:

  • rasterVis (extension)

    rasterVis is a R library that is included as extension in the following software installations:

  • ratelimitr (extension)

    ratelimitr is a R library that is included as extension in the following software installations:

  • RAxML (more details)
    https://github.com/stamatak/standard-RAxML

    RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • RBesT (extension)

    RBesT is a R library that is included as extension in the following software installations:

  • RBGL (extension)

    RBGL is a R library that is included as extension in the following software installations:

  • rbibutils (extension)

    rbibutils is a R library that is included as extension in the following software installations:

  • rbiom (extension)

    rbiom is a R library that is included as extension in the following software installations:

  • rbison (extension)

    rbison is a R library that is included as extension in the following software installations:

  • Rborist (extension)

    Rborist is a R library that is included as extension in the following software installations:

  • RCAL (extension)

    RCAL is a R library that is included as extension in the following software installations:

  • Rcgmin (extension)

    Rcgmin is a R library that is included as extension in the following software installations:

  • RCircos (extension)

    RCircos is a R library that is included as extension in the following software installations:

  • RcisTarget (extension)

    RcisTarget is a R library that is included as extension in the following software installations:

  • rcmdcheck (extension)

    rcmdcheck is a R library that is included as extension in the following software installations:

  • RColorBrewer (extension)

    RColorBrewer is a R library that is included as extension in the following software installations:

  • Rcpp (extension)

    Rcpp is a R library that is included as extension in the following software installations:

  • RcppAnnoy (extension)

    RcppAnnoy is a R library that is included as extension in the following software installations:

  • RcppArmadillo (extension)

    RcppArmadillo is a R library that is included as extension in the following software installations:

  • RcppEigen (extension)

    RcppEigen is a R library that is included as extension in the following software installations:

  • RcppGSL (extension)

    RcppGSL is a R library that is included as extension in the following software installations:

  • RcppHNSW (extension)

    RcppHNSW is a R library that is included as extension in the following software installations:

  • RcppML (extension)

    RcppML is a R library that is included as extension in the following software installations:

  • RcppParallel (extension)

    RcppParallel is a R library that is included as extension in the following software installations:

  • RcppProgress (extension)

    RcppProgress is a R library that is included as extension in the following software installations:

  • RcppRoll (extension)

    RcppRoll is a R library that is included as extension in the following software installations:

  • RcppThread (extension)

    RcppThread is a R library that is included as extension in the following software installations:

  • RcppTOML (extension)

    RcppTOML is a R library that is included as extension in the following software installations:

  • RcppZiggurat (extension)

    RcppZiggurat is a R library that is included as extension in the following software installations:

  • RCurl (extension)

    RCurl is a R library that is included as extension in the following software installations:

  • rda (extension)

    rda is a R library that is included as extension in the following software installations:

  • rdflib (extension)

    rdflib is a Python package that is included as extension in the following software installations:

  • RDFlib (more details)
    https://github.com/RDFLib/rdflib

    RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • RDKit (more details)
    https://www.rdkit.org

    RDKit is a collection of cheminformatics and machine-learning software written in C++ and Python.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Rdpack (extension)

    Rdpack is a R library that is included as extension in the following software installations:

  • rdrop2 (extension)

    rdrop2 is a R library that is included as extension in the following software installations:

  • RE2 (more details)
    https://github.com/google/re2

    RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • re2c (more details)
    https://re2c.org

    re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • reactable (extension)

    reactable is a R library that is included as extension in the following software installations:

  • reactome.db (extension)

    reactome.db is a R library that is included as extension in the following software installations:

  • ReactomePA (extension)

    ReactomePA is a R library that is included as extension in the following software installations:

  • reactR (extension)

    reactR is a R library that is included as extension in the following software installations:

  • readbitmap (extension)

    readbitmap is a R library that is included as extension in the following software installations:

  • reader (extension)

    reader is a R library that is included as extension in the following software installations:

  • readODS (extension)

    readODS is a R library that is included as extension in the following software installations:

  • Readonly (extension)

    Readonly is a Perl module that is included as extension in the following software installations:

  • readr (extension)

    readr is a R library that is included as extension in the following software installations:

  • readxl (extension)

    readxl is a R library that is included as extension in the following software installations:

  • rebird (extension)

    rebird is a R library that is included as extension in the following software installations:

  • recipes (extension)

    recipes is a R library that is included as extension in the following software installations:

  • Redis (more details)
    https://redis.io

    Redis is an open source (BSD licensed), in-memory data structure store, used as a database, cache, and message broker. Redis provides data structures such as strings, hashes, lists, sets, sorted sets with range queries, bitmaps, hyperloglogs, geospatial indexes, and streams. Redis has built-in replication, Lua scripting, LRU eviction, transactions, and different levels of on-disk persistence, and provides high availability via Redis Sentinel and automatic partitioning with Redis Cluster.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • redis-py (extension)

    redis-py is a Python package that is included as extension in the following software installations:

  • redis-py (more details)
    https://github.com/redis/redis-py

    The Python interface to the Redis key-value store.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Redland (more details)
    https://librdf.org/raptor

    Redland is a set of free software C libraries that provide support for the Resource Description Framework (RDF).

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Ref::Util (extension)

    Ref::Util is a Perl module that is included as extension in the following software installations:

  • referencing (extension)

    referencing is a Python package that is included as extension in the following software installations:

  • RefFreeEWAS (extension)

    RefFreeEWAS is a R library that is included as extension in the following software installations:

  • reformulas (extension)

    reformulas is a R library that is included as extension in the following software installations:

  • reframe (extension)

    reframe is a Python package that is included as extension in the following software installations:

  • ReFrame (more details)
    https://github.com/reframe-hpc/reframe

    ReFrame is a framework for writing regression tests for HPC systems.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • regex (extension)

    regex is a Python package that is included as extension in the following software installations:

  • Regexp::Common (extension)

    Regexp::Common is a Perl module that is included as extension in the following software installations:

  • regioneR (extension)

    regioneR is a R library that is included as extension in the following software installations:

  • registry (extension)

    registry is a R library that is included as extension in the following software installations:

  • regsem (extension)

    regsem is a R library that is included as extension in the following software installations:

  • reldist (extension)

    reldist is a R library that is included as extension in the following software installations:

  • relsurv (extension)

    relsurv is a R library that is included as extension in the following software installations:

  • remaCor (extension)

    remaCor is a R library that is included as extension in the following software installations:

  • rematch (extension)

    rematch is a R library that is included as extension in the following software installations:

  • rematch2 (extension)

    rematch2 is a R library that is included as extension in the following software installations:

  • remotes (extension)

    remotes is a R library that is included as extension in the following software installations:

  • rentrez (extension)

    rentrez is a R library that is included as extension in the following software installations:

  • renv (extension)

    renv is a R library that is included as extension in the following software installations:

  • Repitools (extension)

    Repitools is a R library that is included as extension in the following software installations:

  • ReportingTools (extension)

    ReportingTools is a R library that is included as extension in the following software installations:

  • repoze.lru (extension)

    repoze.lru is a Python package that is included as extension in the following software installations:

  • reprex (extension)

    reprex is a R library that is included as extension in the following software installations:

  • requests (extension)

    requests is a Python package that is included as extension in the following software installations:

  • requests-oauthlib (extension)

    requests-oauthlib is a Python package that is included as extension in the following software installations:

  • requests-toolbelt (extension)

    requests-toolbelt is a Python package that is included as extension in the following software installations:

  • reretry (extension)

    reretry is a Python package that is included as extension in the following software installations:

  • resample (extension)

    resample is a R library that is included as extension in the following software installations:

  • resampy (extension)

    resampy is a Python package that is included as extension in the following software installations:

  • reshape (extension)

    reshape is a R library that is included as extension in the following software installations:

  • reshape2 (extension)

    reshape2 is a R library that is included as extension in the following software installations:

  • ResidualMatrix (extension)

    ResidualMatrix is a R library that is included as extension in the following software installations:

  • restfulr (extension)

    restfulr is a R library that is included as extension in the following software installations:

  • reticulate (extension)

    reticulate is a R library that is included as extension in the following software installations:

  • rex (extension)

    rex is a R library that is included as extension in the following software installations:

  • Rfast (extension)

    Rfast is a R library that is included as extension in the following software installations:

  • rfc3339_validator (extension)

    rfc3339_validator is a Python package that is included as extension in the following software installations:

  • rfc3986_validator (extension)

    rfc3986_validator is a Python package that is included as extension in the following software installations:

  • RFOC (extension)

    RFOC is a R library that is included as extension in the following software installations:

  • rGADEM (extension)

    rGADEM is a R library that is included as extension in the following software installations:

  • rgbif (extension)

    rgbif is a R library that is included as extension in the following software installations:

  • RGCCA (extension)

    RGCCA is a R library that is included as extension in the following software installations:

  • rgdal (extension)

    rgdal is a R library that is included as extension in the following software installations:

  • rgeos (extension)

    rgeos is a R library that is included as extension in the following software installations:

  • rgexf (extension)

    rgexf is a R library that is included as extension in the following software installations:

  • rgl (extension)

    rgl is a R library that is included as extension in the following software installations:

  • Rglpk (extension)

    Rglpk is a R library that is included as extension in the following software installations:

  • Rgraphviz (extension)

    Rgraphviz is a R library that is included as extension in the following software installations:

  • rhandsontable (extension)

    rhandsontable is a R library that is included as extension in the following software installations:

  • rhdf5 (extension)

    rhdf5 is a R library that is included as extension in the following software installations:

  • rhdf5filters (extension)

    rhdf5filters is a R library that is included as extension in the following software installations:

  • Rhdf5lib (extension)

    Rhdf5lib is a R library that is included as extension in the following software installations:

  • RhpcBLASctl (extension)

    RhpcBLASctl is a R library that is included as extension in the following software installations:

  • Rhtslib (extension)

    Rhtslib is a R library that is included as extension in the following software installations:

  • rich (extension)

    rich is a Python package that is included as extension in the following software installations:

  • rich-argparse (extension)

    rich-argparse is a Python package that is included as extension in the following software installations:

  • rich-click (extension)

    rich-click is a Python package that is included as extension in the following software installations:

  • ridge (extension)

    ridge is a R library that is included as extension in the following software installations:

  • ridigbio (extension)

    ridigbio is a R library that is included as extension in the following software installations:

  • Ringo (extension)

    Ringo is a R library that is included as extension in the following software installations:

  • RInside (extension)

    RInside is a R library that is included as extension in the following software installations:

  • rio (extension)

    rio is a R library that is included as extension in the following software installations:

  • riskRegression (extension)

    riskRegression is a R library that is included as extension in the following software installations:

  • ritis (extension)

    ritis is a R library that is included as extension in the following software installations:

  • RItools (extension)

    RItools is a R library that is included as extension in the following software installations:

  • Rivet (more details)
    https://gitlab.com/hepcedar/rivet

    Rivet toolkit (Robust Independent Validation of Experiment and Theory) To use your own analysis you must append the path to RIVET_ANALYSIS_PATH.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • rJava (extension)

    rJava is a R library that is included as extension in the following software installations:

  • rjson (extension)

    rjson is a R library that is included as extension in the following software installations:

  • RJSONIO (extension)

    RJSONIO is a R library that is included as extension in the following software installations:

  • rlang (extension)

    rlang is a R library that is included as extension in the following software installations:

  • rle (extension)

    rle is a R library that is included as extension in the following software installations:

  • rlecuyer (extension)

    rlecuyer is a R library that is included as extension in the following software installations:

  • rlemon (extension)

    rlemon is a R library that is included as extension in the following software installations:

  • rlist (extension)

    rlist is a R library that is included as extension in the following software installations:

  • rmarkdown (extension)

    rmarkdown is a R library that is included as extension in the following software installations:

  • rmeta (extension)

    rmeta is a R library that is included as extension in the following software installations:

  • rmextract (extension)

    rmextract is a Python package that is included as extension in the following software installations:

  • RMextract (more details)
    https://github.com/lofar-astron/RMextract

    Extract TEC, vTEC, Earthmagnetic field and Rotation Measures from GPS and WMM data for radio interferometry observations

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Rmpfr (extension)

    Rmpfr is a R library that is included as extension in the following software installations:

  • rms (extension)

    rms is a R library that is included as extension in the following software installations:

  • RMTstat (extension)

    RMTstat is a R library that is included as extension in the following software installations:

  • rmutil (extension)

    rmutil is a R library that is included as extension in the following software installations:

  • RNASeqPower (extension)

    RNASeqPower is a R library that is included as extension in the following software installations:

  • RnBeads (extension)

    RnBeads is a R library that is included as extension in the following software installations:

  • RnBeads.hg19 (extension)

    RnBeads.hg19 is a R library that is included as extension in the following software installations:

  • RnBeads.hg38 (extension)

    RnBeads.hg38 is a R library that is included as extension in the following software installations:

  • RnBeads.mm10 (extension)

    RnBeads.mm10 is a R library that is included as extension in the following software installations:

  • RnBeads.mm9 (extension)

    RnBeads.mm9 is a R library that is included as extension in the following software installations:

  • RnBeads.rn5 (extension)

    RnBeads.rn5 is a R library that is included as extension in the following software installations:

  • rncl (extension)

    rncl is a R library that is included as extension in the following software installations:

  • rnetcarto (extension)

    rnetcarto is a R library that is included as extension in the following software installations:

  • RNeXML (extension)

    RNeXML is a R library that is included as extension in the following software installations:

  • rngtools (extension)

    rngtools is a R library that is included as extension in the following software installations:

  • rngWELL (extension)

    rngWELL is a R library that is included as extension in the following software installations:

  • RNifti (extension)

    RNifti is a R library that is included as extension in the following software installations:

  • robin-map (more details)
    https://github.com/Tessil/robin-map

    robin-map is a C++ implementation of a fast and memory efficient hash table. It is based on Robin Hood hashing with backward shift deletion.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • robustbase (extension)

    robustbase is a R library that is included as extension in the following software installations:

  • ROC (extension)

    ROC is a R library that is included as extension in the following software installations:

  • ROCR (extension)

    ROCR is a R library that is included as extension in the following software installations:

  • ROI (extension)

    ROI is a R library that is included as extension in the following software installations:

  • ROI.plugin.glpk (extension)

    ROI.plugin.glpk is a R library that is included as extension in the following software installations:

  • Role::HasMessage (extension)

    Role::HasMessage is a Perl module that is included as extension in the following software installations:

  • Role::Identifiable::HasIdent (extension)

    Role::Identifiable::HasIdent is a Perl module that is included as extension in the following software installations:

  • Role::Tiny (extension)

    Role::Tiny is a Perl module that is included as extension in the following software installations:

  • rols (extension)

    rols is a R library that is included as extension in the following software installations:

  • roman-numerals-py (extension)

    roman-numerals-py is a Python package that is included as extension in the following software installations:

  • ROntoTools (extension)

    ROntoTools is a R library that is included as extension in the following software installations:

  • Rook (extension)

    Rook is a R library that is included as extension in the following software installations:

  • ROOT (more details)
    https://root.cern.ch, https://root.cern.ch/drupal

    The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • rootSolve (extension)

    rootSolve is a R library that is included as extension in the following software installations:

  • ropls (extension)

    ropls is a R library that is included as extension in the following software installations:

  • roptim (extension)

    roptim is a R library that is included as extension in the following software installations:

  • rotl (extension)

    rotl is a R library that is included as extension in the following software installations:

  • Routes (extension)

    Routes is a Python package that is included as extension in the following software installations:

  • roxygen2 (extension)

    roxygen2 is a R library that is included as extension in the following software installations:

  • rpact (extension)

    rpact is a R library that is included as extension in the following software installations:

  • rpart (extension)

    rpart is a R library that is included as extension in the following software installations:

  • rpds-py (extension)

    rpds-py is a Python package that is included as extension in the following software installations:

  • rpds_py (extension)

    rpds_py is a Python package that is included as extension in the following software installations:

  • rpf (extension)

    rpf is a R library that is included as extension in the following software installations:

  • RPMG (extension)

    RPMG is a R library that is included as extension in the following software installations:

  • RPMM (extension)

    RPMM is a R library that is included as extension in the following software installations:

  • RPostgreSQL (extension)

    RPostgreSQL is a R library that is included as extension in the following software installations:

  • rprojroot (extension)

    rprojroot is a R library that is included as extension in the following software installations:

  • RProtoBufLib (extension)

    RProtoBufLib is a R library that is included as extension in the following software installations:

  • RPushbullet (extension)

    RPushbullet is a R library that is included as extension in the following software installations:

  • rpy2 (extension)

    rpy2 is a Python package that is included as extension in the following software installations:

  • rpy2 (more details)
    https://rpy2.github.io

    rpy2 is an interface to R running embedded in a Python process.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • rrcov (extension)

    rrcov is a R library that is included as extension in the following software installations:

  • rredlist (extension)

    rredlist is a R library that is included as extension in the following software installations:

  • rsa (extension)

    rsa is a Python package that is included as extension in the following software installations:

  • rsample (extension)

    rsample is a R library that is included as extension in the following software installations:

  • Rsamtools (extension)

    Rsamtools is a R library that is included as extension in the following software installations:

  • rsconnect (extension)

    rsconnect is a R library that is included as extension in the following software installations:

  • RSEIS (extension)

    RSEIS is a R library that is included as extension in the following software installations:

  • Rserve (extension)

    Rserve is a R library that is included as extension in the following software installations:

  • RSNNS (extension)

    RSNNS is a R library that is included as extension in the following software installations:

  • Rsolnp (extension)

    Rsolnp is a R library that is included as extension in the following software installations:

  • rspec (extension)

    rspec is a that is included as extension in the following software installations:

  • rspec-core (extension)

    rspec-core is a that is included as extension in the following software installations:

  • rspec-expectations (extension)

    rspec-expectations is a that is included as extension in the following software installations:

  • rspec-mocks (extension)

    rspec-mocks is a that is included as extension in the following software installations:

  • rspec-support (extension)

    rspec-support is a that is included as extension in the following software installations:

  • RSpectra (extension)

    RSpectra is a R library that is included as extension in the following software installations:

  • RSQLite (extension)

    RSQLite is a R library that is included as extension in the following software installations:

  • Rssa (extension)

    Rssa is a R library that is included as extension in the following software installations:

  • rstan (extension)

    rstan is a R library that is included as extension in the following software installations:

  • rstantools (extension)

    rstantools is a R library that is included as extension in the following software installations:

  • rstatix (extension)

    rstatix is a R library that is included as extension in the following software installations:

  • RStudio-Server (more details)
    https://www.rstudio.com

    This is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port=8787 If you need a database config one can be created with: MYTMP=mktemp -d && echo -e "provider=sqlite\ndirectory=${MYTMP}/sqlite" more than "${MYTMP}/db.conf" and then used with: rserver ... --database-config-file="${MYTMP}/db.conf"

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • rstudioapi (extension)

    rstudioapi is a R library that is included as extension in the following software installations:

  • Rsubread (extension)

    Rsubread is a R library that is included as extension in the following software installations:

  • rsvd (extension)

    rsvd is a R library that is included as extension in the following software installations:

  • rtdists (extension)

    rtdists is a R library that is included as extension in the following software installations:

  • rtracklayer (extension)

    rtracklayer is a R library that is included as extension in the following software installations:

  • Rtsne (extension)

    Rtsne is a R library that is included as extension in the following software installations:

  • Rttf2pt1 (extension)

    Rttf2pt1 is a R library that is included as extension in the following software installations:

  • ruamel.yaml (extension)

    ruamel.yaml is a Python package that is included as extension in the following software installations:

  • ruamel.yaml (more details)
    https://sourceforge.net/projects/ruamel-yaml

    ruamel.yaml is a YAML 1.2 loader/dumper package for Python.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ruamel.yaml.base (extension)

    ruamel.yaml.base is a Python package that is included as extension in the following software installations:

  • ruamel.yaml.clib (extension)

    ruamel.yaml.clib is a Python package that is included as extension in the following software installations:

  • ruamel.yaml.cmd (extension)

    ruamel.yaml.cmd is a Python package that is included as extension in the following software installations:

  • ruamel.yaml.convert (extension)

    ruamel.yaml.convert is a Python package that is included as extension in the following software installations:

  • ruamel.yaml.jinja2 (extension)

    ruamel.yaml.jinja2 is a Python package that is included as extension in the following software installations:

  • Ruby (more details)
    https://www.ruby-lang.org

    Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ruby2_keywords (extension)

    ruby2_keywords is a that is included as extension in the following software installations:

  • ruff (extension)

    ruff is a Python package that is included as extension in the following software installations:

  • RUnit (extension)

    RUnit is a R library that is included as extension in the following software installations:

  • Rust (more details)
    https://www.rust-lang.org

    Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ruv (extension)

    ruv is a R library that is included as extension in the following software installations:

  • rversions (extension)

    rversions is a R library that is included as extension in the following software installations:

  • rvertnet (extension)

    rvertnet is a R library that is included as extension in the following software installations:

  • rvest (extension)

    rvest is a R library that is included as extension in the following software installations:

  • rvinecopulib (extension)

    rvinecopulib is a R library that is included as extension in the following software installations:

  • Rvmmin (extension)

    Rvmmin is a R library that is included as extension in the following software installations:

  • Rwave (extension)

    Rwave is a R library that is included as extension in the following software installations:

  • RWeka (extension)

    RWeka is a R library that is included as extension in the following software installations:

  • RWekajars (extension)

    RWekajars is a R library that is included as extension in the following software installations:

  • s (extension)

    s is a R library that is included as extension in the following software installations:

  • s2 (extension)

    s2 is a R library that is included as extension in the following software installations:

  • s3transfer (extension)

    s3transfer is a Python package that is included as extension in the following software installations:

  • S4Arrays (extension)

    S4Arrays is a R library that is included as extension in the following software installations:

  • S4Vectors (extension)

    S4Vectors is a R library that is included as extension in the following software installations:

  • SAGECal (more details)
    https://sagecal.sourceforge.net

    SAGECal is a fast, distributed and GPU accelerated radio astronomial calibration package. The many optimization algorithms in SAGECal are implemented in a computationally efficient way and can be used in many other applications.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Salmon (more details)
    https://github.com/COMBINE-lab/salmon

    Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimate from RNA-seq data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • sampling (extension)

    sampling is a R library that is included as extension in the following software installations:

  • samr (extension)

    samr is a R library that is included as extension in the following software installations:

  • SamSPECTRAL (extension)

    SamSPECTRAL is a R library that is included as extension in the following software installations:

  • SAMtools (more details)
    https://www.htslib.org

    SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • sandwich (extension)

    sandwich is a R library that is included as extension in the following software installations:

  • sass (extension)

    sass is a R library that is included as extension in the following software installations:

  • SBdecomp (extension)

    SBdecomp is a R library that is included as extension in the following software installations:

  • SC3 (extension)

    SC3 is a R library that is included as extension in the following software installations:

  • ScaFaCoS (more details)
    http://www.scafacos.de

    ScaFaCoS is a library of scalable fast coulomb solvers.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntel
    Supported GPU families: (none)

  • ScaLAPACK (more details)
    https://www.netlib.org/scalapack

    The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Scalar::Util (extension)

    Scalar::Util is a Perl module that is included as extension in the following software installations:

  • Scalar::Util::Numeric (extension)

    Scalar::Util::Numeric is a Perl module that is included as extension in the following software installations:

  • ScaledMatrix (extension)

    ScaledMatrix is a R library that is included as extension in the following software installations:

  • scales (extension)

    scales is a R library that is included as extension in the following software installations:

  • scam (extension)

    scam is a R library that is included as extension in the following software installations:

  • scandir (extension)

    scandir is a Python package that is included as extension in the following software installations:

  • scanpy (extension)

    scanpy is a Python package that is included as extension in the following software installations:

  • scanpy (more details)
    https://scanpy.readthedocs.io/en/stable

    Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SCANVIS (extension)

    SCANVIS is a R library that is included as extension in the following software installations:

  • scater (extension)

    scater is a R library that is included as extension in the following software installations:

  • scattermore (extension)

    scattermore is a R library that is included as extension in the following software installations:

  • scatterpie (extension)

    scatterpie is a R library that is included as extension in the following software installations:

  • scatterplot3d (extension)

    scatterplot3d is a R library that is included as extension in the following software installations:

  • scCODA (extension)

    scCODA is a Python package that is included as extension in the following software installations:

  • scCODA (more details)
    https://github.com/theislab/scCODA

    scCODA allows for identification of compositional changes in high-throughput sequencing count data, especially cell compositions from scRNA-seq.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scDblFinder (extension)

    scDblFinder is a R library that is included as extension in the following software installations:

  • schema-salad (extension)

    schema-salad is a Python package that is included as extension in the following software installations:

  • scikit-bio (extension)

    scikit-bio is a Python package that is included as extension in the following software installations:

  • scikit-bio (more details)
    http://scikit-bio.org

    scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and educational resources for bioinformatics.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scikit-build (extension)

    scikit-build is a Python package that is included as extension in the following software installations:

  • scikit-build (more details)
    https://scikit-build.readthedocs.io/en/latest

    Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scikit-build-core (more details)
    https://scikit-build.readthedocs.io/en/latest

    Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scikit-learn (extension)

    scikit-learn is a Python package that is included as extension in the following software installations:

  • scikit-learn (more details)
    https://scikit-learn.org/stable/index.html

    Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scikit_build (extension)

    scikit_build is a Python package that is included as extension in the following software installations:

  • scikit_build_core (extension)

    scikit_build_core is a Python package that is included as extension in the following software installations:

  • scipy (extension)

    scipy is a Python package that is included as extension in the following software installations:

  • SciPy-bundle (more details)
    https://python.org

    Bundle of Python packages for scientific software

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scistreer (extension)

    scistreer is a R library that is included as extension in the following software installations:

  • SciTools-Iris (more details)
    https://scitools-iris.readthedocs.io

    A powerful, format-agnostic, community-driven Python package for analysing and visualising Earth science data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scitools_iris (extension)

    scitools_iris is a Python package that is included as extension in the following software installations:

  • Scope::Guard (extension)

    Scope::Guard is a Perl module that is included as extension in the following software installations:

  • Score-P (more details)
    https://www.score-p.org

    The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SCOTCH (more details)
    https://www.labri.fr/perso/pelegrin/scotch

    Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • scran (extension)

    scran is a R library that is included as extension in the following software installations:

  • scrime (extension)

    scrime is a R library that is included as extension in the following software installations:

  • scs (extension)

    scs is a R library that is included as extension in the following software installations:

  • sctransform (extension)

    sctransform is a R library that is included as extension in the following software installations:

  • scuttle (extension)

    scuttle is a R library that is included as extension in the following software installations:

  • SDL2 (more details)
    https://www.libsdl.org

    SDL: Simple DirectMedia Layer, a cross-platform multimedia library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SDMTools (extension)

    SDMTools is a R library that is included as extension in the following software installations:

  • Seaborn (more details)
    https://seaborn.pydata.org

    Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • seatd (more details)
    https://sr.ht/~kennylevinsen/seatd

    A minimal seat management daemon, and a universal seat management library.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SecretStorage (extension)

    SecretStorage is a Python package that is included as extension in the following software installations:

  • seekpath (extension)

    seekpath is a Python package that is included as extension in the following software installations:

  • seewave (extension)

    seewave is a R library that is included as extension in the following software installations:

  • segmented (extension)

    segmented is a R library that is included as extension in the following software installations:

  • selectr (extension)

    selectr is a R library that is included as extension in the following software installations:

  • sem (extension)

    sem is a R library that is included as extension in the following software installations:

  • semantic-version (extension)

    semantic-version is a Python package that is included as extension in the following software installations:

  • semantic_version (extension)

    semantic_version is a Python package that is included as extension in the following software installations:

  • semPLS (extension)

    semPLS is a R library that is included as extension in the following software installations:

  • semTools (extension)

    semTools is a R library that is included as extension in the following software installations:

  • Send2Trash (extension)

    Send2Trash is a Python package that is included as extension in the following software installations:

  • sendmailR (extension)

    sendmailR is a R library that is included as extension in the following software installations:

  • sensemakr (extension)

    sensemakr is a R library that is included as extension in the following software installations:

  • sentinels (extension)

    sentinels is a Python package that is included as extension in the following software installations:

  • sentometrics (extension)

    sentometrics is a R library that is included as extension in the following software installations:

  • SEPP (more details)
    https://github.com/smirarab/sepp

    SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SeqArray (extension)

    SeqArray is a R library that is included as extension in the following software installations:

  • seqinr (extension)

    seqinr is a R library that is included as extension in the following software installations:

  • seqLogo (extension)

    seqLogo is a R library that is included as extension in the following software installations:

  • seqPattern (extension)

    seqPattern is a R library that is included as extension in the following software installations:

  • SeqVarTools (extension)

    SeqVarTools is a R library that is included as extension in the following software installations:

  • seriation (extension)

    seriation is a R library that is included as extension in the following software installations:

  • servr (extension)

    servr is a R library that is included as extension in the following software installations:

  • session-info (extension)

    session-info is a Python package that is included as extension in the following software installations:

  • sessioninfo (extension)

    sessioninfo is a R library that is included as extension in the following software installations:

  • Set::Array (extension)

    Set::Array is a Perl module that is included as extension in the following software installations:

  • Set::IntervalTree (extension)

    Set::IntervalTree is a Perl module that is included as extension in the following software installations:

  • Set::IntSpan (extension)

    Set::IntSpan is a Perl module that is included as extension in the following software installations:

  • Set::IntSpan::Fast (extension)

    Set::IntSpan::Fast is a Perl module that is included as extension in the following software installations:

  • Set::Object (extension)

    Set::Object is a Perl module that is included as extension in the following software installations:

  • Set::Scalar (extension)

    Set::Scalar is a Perl module that is included as extension in the following software installations:

  • setRNG (extension)

    setRNG is a R library that is included as extension in the following software installations:

  • setuptools (extension)

    setuptools is a Python package that is included as extension in the following software installations:

  • setuptools (more details)
    https://pypi.org/project/setuptools

    Easily download, build, install, upgrade, and uninstall Python packages

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • setuptools-rust (extension)

    setuptools-rust is a Python package that is included as extension in the following software installations:

  • setuptools-rust (more details)
    https://github.com/PyO3/setuptools-rust

    setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • setuptools-scm (extension)

    setuptools-scm is a Python package that is included as extension in the following software installations:

  • setuptools_scm (extension)

    setuptools_scm is a Python package that is included as extension in the following software installations:

  • Seurat (extension)

    Seurat is a R library that is included as extension in the following software installations:

  • SeuratObject (extension)

    SeuratObject is a R library that is included as extension in the following software installations:

  • sf (extension)

    sf is a R library that is included as extension in the following software installations:

  • sfheaders (extension)

    sfheaders is a R library that is included as extension in the following software installations:

  • sfsmisc (extension)

    sfsmisc is a R library that is included as extension in the following software installations:

  • sgdGMF (extension)

    sgdGMF is a R library that is included as extension in the following software installations:

  • shadowtext (extension)

    shadowtext is a R library that is included as extension in the following software installations:

  • shape (extension)

    shape is a R library that is included as extension in the following software installations:

  • shapefiles (extension)

    shapefiles is a R library that is included as extension in the following software installations:

  • Shapely (more details)
    https://github.com/Toblerity/Shapely

    Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • shared-mime-info (more details)
    https://gitlab.freedesktop.org/xdg/shared-mime-info

    The shared-mime-info package contains: The core database of common MIME types, their file extensions and icon names. The update-mime-database command, used to extend the DB and install a new MIME data. The freedesktop.org shared MIME database spec. It is used by GLib, GNOME, KDE, XFCE and many others.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Shell (extension)

    Shell is a Perl module that is included as extension in the following software installations:

  • shellingham (extension)

    shellingham is a Python package that is included as extension in the following software installations:

  • shiny (extension)

    shiny is a R library that is included as extension in the following software installations:

  • shinyBS (extension)

    shinyBS is a R library that is included as extension in the following software installations:

  • shinycssloaders (extension)

    shinycssloaders is a R library that is included as extension in the following software installations:

  • shinydashboard (extension)

    shinydashboard is a R library that is included as extension in the following software installations:

  • shinydashboardPlus (extension)

    shinydashboardPlus is a R library that is included as extension in the following software installations:

  • shinyFiles (extension)

    shinyFiles is a R library that is included as extension in the following software installations:

  • shinyhelper (extension)

    shinyhelper is a R library that is included as extension in the following software installations:

  • shinyjs (extension)

    shinyjs is a R library that is included as extension in the following software installations:

  • shinypanel (extension)

    shinypanel is a R library that is included as extension in the following software installations:

  • shinystan (extension)

    shinystan is a R library that is included as extension in the following software installations:

  • shinythemes (extension)

    shinythemes is a R library that is included as extension in the following software installations:

  • shinyWidgets (extension)

    shinyWidgets is a R library that is included as extension in the following software installations:

  • ShortRead (extension)

    ShortRead is a R library that is included as extension in the following software installations:

  • shortuuid (extension)

    shortuuid is a Python package that is included as extension in the following software installations:

  • Siesta (more details)
    https://siesta-project.org/siesta/About/overview.html

    SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • siggenes (extension)

    siggenes is a R library that is included as extension in the following software installations:

  • Signac (extension)

    Signac is a R library that is included as extension in the following software installations:

  • signal (extension)

    signal is a R library that is included as extension in the following software installations:

  • SignifReg (extension)

    SignifReg is a R library that is included as extension in the following software installations:

  • SimBu (extension)

    SimBu is a R library that is included as extension in the following software installations:

  • SimDesign (extension)

    SimDesign is a R library that is included as extension in the following software installations:

  • simex (extension)

    simex is a R library that is included as extension in the following software installations:

  • simona (extension)

    simona is a R library that is included as extension in the following software installations:

  • Simple-DFTD3 (more details)
    https://dftd3.readthedocs.io

    Reimplementation of the D3 dispersion correction. The s-dftd3 project aims to provide a user-friendly and uniform interface to the D3 dispersion model and for the calculation of DFT-D3 dispersion corrections.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • simplegeneric (extension)

    simplegeneric is a Python package that is included as extension in the following software installations:

  • simplejson (extension)

    simplejson is a Python package that is included as extension in the following software installations:

  • simplifyEnrichment (extension)

    simplifyEnrichment is a R library that is included as extension in the following software installations:

  • SimSeq (extension)

    SimSeq is a R library that is included as extension in the following software installations:

  • sinatra (extension)

    sinatra is a that is included as extension in the following software installations:

  • SingleCellExperiment (extension)

    SingleCellExperiment is a R library that is included as extension in the following software installations:

  • SingleR (extension)

    SingleR is a R library that is included as extension in the following software installations:

  • SIONlib (more details)
    https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html

    SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SIP (more details)
    http://www.riverbankcomputing.com/software/sip

    SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • siscone (more details)
    https://siscone.hepforge.org

    Hadron Seedless Infrared-Safe Cone jet algorithm

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • sitmo (extension)

    sitmo is a R library that is included as extension in the following software installations:

  • six (extension)

    six is a Python package that is included as extension in the following software installations:

  • SKAT (extension)

    SKAT is a R library that is included as extension in the following software installations:

  • sklearn (extension)

    sklearn is a Python package that is included as extension in the following software installations:

  • slam (extension)

    slam is a R library that is included as extension in the following software installations:

  • SLEPc (more details)
    https://slepc.upv.es

    SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • slepc4py (more details)
    https://bitbucket.org/slepc/slepc4py

    Python bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • slider (extension)

    slider is a R library that is included as extension in the following software installations:

  • slingshot (extension)

    slingshot is a R library that is included as extension in the following software installations:

  • slurm-viewer (extension)

    slurm-viewer is a Python package that is included as extension in the following software installations:

  • SlurmViewer (more details)
    https://gitlab.com/lkeb/slurm_viewer

    View the status of a Slurm cluster, including nodes and queue.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • sm (extension)

    sm is a R library that is included as extension in the following software installations:

  • smart-open (extension)

    smart-open is a Python package that is included as extension in the following software installations:

  • smmap (extension)

    smmap is a Python package that is included as extension in the following software installations:

  • smoof (extension)

    smoof is a R library that is included as extension in the following software installations:

  • smoother (extension)

    smoother is a R library that is included as extension in the following software installations:

  • SMVar (extension)

    SMVar is a R library that is included as extension in the following software installations:

  • sn (extension)

    sn is a R library that is included as extension in the following software installations:

  • sna (extension)

    sna is a R library that is included as extension in the following software installations:

  • snakemake (extension)

    snakemake is a Python package that is included as extension in the following software installations:

  • snakemake (more details)
    https://snakemake.readthedocs.io

    The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • snakemake-executor-plugin-cluster-generic (extension)

    snakemake-executor-plugin-cluster-generic is a Python package that is included as extension in the following software installations:

  • snakemake-executor-plugin-cluster-sync (extension)

    snakemake-executor-plugin-cluster-sync is a Python package that is included as extension in the following software installations:

  • snakemake-executor-plugin-flux (extension)

    snakemake-executor-plugin-flux is a Python package that is included as extension in the following software installations:

  • snakemake-executor-plugin-slurm (extension)

    snakemake-executor-plugin-slurm is a Python package that is included as extension in the following software installations:

  • snakemake-executor-plugin-slurm-jobstep (extension)

    snakemake-executor-plugin-slurm-jobstep is a Python package that is included as extension in the following software installations:

  • snakemake-interface-common (extension)

    snakemake-interface-common is a Python package that is included as extension in the following software installations:

  • snakemake-interface-executor-plugins (extension)

    snakemake-interface-executor-plugins is a Python package that is included as extension in the following software installations:

  • snakemake-interface-report-plugins (extension)

    snakemake-interface-report-plugins is a Python package that is included as extension in the following software installations:

  • snakemake-interface-storage-plugins (extension)

    snakemake-interface-storage-plugins is a Python package that is included as extension in the following software installations:

  • snappy (more details)
    https://github.com/google/snappy

    Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SNFtool (extension)

    SNFtool is a R library that is included as extension in the following software installations:

  • sniffio (extension)

    sniffio is a Python package that is included as extension in the following software installations:

  • snow (extension)

    snow is a R library that is included as extension in the following software installations:

  • SnowballC (extension)

    SnowballC is a R library that is included as extension in the following software installations:

  • snowballstemmer (extension)

    snowballstemmer is a Python package that is included as extension in the following software installations:

  • snowfall (extension)

    snowfall is a R library that is included as extension in the following software installations:

  • SNPRelate (extension)

    SNPRelate is a R library that is included as extension in the following software installations:

  • snpStats (extension)

    snpStats is a R library that is included as extension in the following software installations:

  • SOAR (extension)

    SOAR is a R library that is included as extension in the following software installations:

  • SOCI (more details)
    http://soci.sourceforge.net

    SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Socket (extension)

    Socket is a Perl module that is included as extension in the following software installations:

  • Software::License (extension)

    Software::License is a Perl module that is included as extension in the following software installations:

  • Solids4foam (more details)
    https://www.solids4foam.com

    A toolbox for performing solid mechanics and fluid-solid interactions in OpenFOAM.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • solrium (extension)

    solrium is a R library that is included as extension in the following software installations:

  • som (extension)

    som is a R library that is included as extension in the following software installations:

  • sortedcontainers (extension)

    sortedcontainers is a Python package that is included as extension in the following software installations:

  • soundecology (extension)

    soundecology is a R library that is included as extension in the following software installations:

  • soundfile (extension)

    soundfile is a Python package that is included as extension in the following software installations:

  • soupsieve (extension)

    soupsieve is a Python package that is included as extension in the following software installations:

  • sourcetools (extension)

    sourcetools is a R library that is included as extension in the following software installations:

  • soxr (extension)

    soxr is a Python package that is included as extension in the following software installations:

  • sp (extension)

    sp is a R library that is included as extension in the following software installations:

  • spaa (extension)

    spaa is a R library that is included as extension in the following software installations:

  • spacefillr (extension)

    spacefillr is a R library that is included as extension in the following software installations:

  • spam (extension)

    spam is a R library that is included as extension in the following software installations:

  • spaMM (extension)

    spaMM is a R library that is included as extension in the following software installations:

  • sparse (extension)

    sparse is a Python package that is included as extension in the following software installations:

  • SparseArray (extension)

    SparseArray is a R library that is included as extension in the following software installations:

  • SparseM (extension)

    SparseM is a R library that is included as extension in the following software installations:

  • sparseMatrixStats (extension)

    sparseMatrixStats is a R library that is included as extension in the following software installations:

  • sparsesvd (extension)

    sparsesvd is a R library that is included as extension in the following software installations:

  • SPAtest (extension)

    SPAtest is a R library that is included as extension in the following software installations:

  • spatial (extension)

    spatial is a R library that is included as extension in the following software installations:

  • SpatialExperiment (extension)

    SpatialExperiment is a R library that is included as extension in the following software installations:

  • spatstat (extension)

    spatstat is a R library that is included as extension in the following software installations:

  • spatstat.core (extension)

    spatstat.core is a R library that is included as extension in the following software installations:

  • spatstat.data (extension)

    spatstat.data is a R library that is included as extension in the following software installations:

  • spatstat.explore (extension)

    spatstat.explore is a R library that is included as extension in the following software installations:

  • spatstat.geom (extension)

    spatstat.geom is a R library that is included as extension in the following software installations:

  • spatstat.linnet (extension)

    spatstat.linnet is a R library that is included as extension in the following software installations:

  • spatstat.model (extension)

    spatstat.model is a R library that is included as extension in the following software installations:

  • spatstat.random (extension)

    spatstat.random is a R library that is included as extension in the following software installations:

  • spatstat.sparse (extension)

    spatstat.sparse is a R library that is included as extension in the following software installations:

  • spatstat.univar (extension)

    spatstat.univar is a R library that is included as extension in the following software installations:

  • spatstat.utils (extension)

    spatstat.utils is a R library that is included as extension in the following software installations:

  • spData (extension)

    spData is a R library that is included as extension in the following software installations:

  • spdep (extension)

    spdep is a R library that is included as extension in the following software installations:

  • spdlog (more details)
    https://github.com/gabime/spdlog

    Very fast, header-only/compiled, C++ logging library.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Specio (extension)

    Specio is a Perl module that is included as extension in the following software installations:

  • spectra (extension)

    spectra is a Python package that is included as extension in the following software installations:

  • Spectra (extension)

    Spectra is a R library that is included as extension in the following software installations:

  • spglib (extension)

    spglib is a Python package that is included as extension in the following software installations:

  • spglib-python (more details)
    https://pypi.python.org/pypi/spglib

    Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Sphinx (extension)

    Sphinx is a Python package that is included as extension in the following software installations:

  • sphinx (extension)

    sphinx is a Python package that is included as extension in the following software installations:

  • sphinx-bootstrap-theme (extension)

    sphinx-bootstrap-theme is a Python package that is included as extension in the following software installations:

  • sphinxcontrib-applehelp (extension)

    sphinxcontrib-applehelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib-devhelp (extension)

    sphinxcontrib-devhelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib-htmlhelp (extension)

    sphinxcontrib-htmlhelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib-jsmath (extension)

    sphinxcontrib-jsmath is a Python package that is included as extension in the following software installations:

  • sphinxcontrib-qthelp (extension)

    sphinxcontrib-qthelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib-serializinghtml (extension)

    sphinxcontrib-serializinghtml is a Python package that is included as extension in the following software installations:

  • sphinxcontrib-websupport (extension)

    sphinxcontrib-websupport is a Python package that is included as extension in the following software installations:

  • sphinxcontrib_applehelp (extension)

    sphinxcontrib_applehelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib_devhelp (extension)

    sphinxcontrib_devhelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib_htmlhelp (extension)

    sphinxcontrib_htmlhelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib_qthelp (extension)

    sphinxcontrib_qthelp is a Python package that is included as extension in the following software installations:

  • sphinxcontrib_serializinghtml (extension)

    sphinxcontrib_serializinghtml is a Python package that is included as extension in the following software installations:

  • sphinxcontrib_websupport (extension)

    sphinxcontrib_websupport is a Python package that is included as extension in the following software installations:

  • SPIA (extension)

    SPIA is a R library that is included as extension in the following software installations:

  • Spiffy (extension)

    Spiffy is a Perl module that is included as extension in the following software installations:

  • spin (more details)
    https://github.com/scientific-python/spin

    Developer tool for scientific Python libraries

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • splancs (extension)

    splancs is a R library that is included as extension in the following software installations:

  • splitstackshape (extension)

    splitstackshape is a R library that is included as extension in the following software installations:

  • spls (extension)

    spls is a R library that is included as extension in the following software installations:

  • spocc (extension)

    spocc is a R library that is included as extension in the following software installations:

  • SPOTlight (extension)

    SPOTlight is a R library that is included as extension in the following software installations:

  • spThin (extension)

    spThin is a R library that is included as extension in the following software installations:

  • spython (extension)

    spython is a Python package that is included as extension in the following software installations:

  • SQL::Abstract (extension)

    SQL::Abstract is a Perl module that is included as extension in the following software installations:

  • SQL::Statement (extension)

    SQL::Statement is a Perl module that is included as extension in the following software installations:

  • SQLAlchemy (extension)

    SQLAlchemy is a Python package that is included as extension in the following software installations:

  • sqlalchemy (extension)

    sqlalchemy is a Python package that is included as extension in the following software installations:

  • SQLAlchemy (more details)
    https://www.sqlalchemy.org

    SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SQLite (more details)
    https://www.sqlite.org

    SQLite: SQL Database Engine in a C Library

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • sqlparse (extension)

    sqlparse is a Python package that is included as extension in the following software installations:

  • SQUAREM (extension)

    SQUAREM is a R library that is included as extension in the following software installations:

  • sshtunnel (extension)

    sshtunnel is a Python package that is included as extension in the following software installations:

  • stable (extension)

    stable is a R library that is included as extension in the following software installations:

  • stabledist (extension)

    stabledist is a R library that is included as extension in the following software installations:

  • stabs (extension)

    stabs is a R library that is included as extension in the following software installations:

  • stack_data (extension)

    stack_data is a Python package that is included as extension in the following software installations:

  • stageR (extension)

    stageR is a R library that is included as extension in the following software installations:

  • StanHeaders (extension)

    StanHeaders is a R library that is included as extension in the following software installations:

  • STAR (more details)
    https://github.com/alexdobin/STAR

    STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • stargazer (extension)

    stargazer is a R library that is included as extension in the following software installations:

  • starlette (extension)

    starlette is a Python package that is included as extension in the following software installations:

  • stars (extension)

    stars is a R library that is included as extension in the following software installations:

  • startupmsg (extension)

    startupmsg is a R library that is included as extension in the following software installations:

  • statip (extension)

    statip is a R library that is included as extension in the following software installations:

  • statistics (extension)

    statistics is a that is included as extension in the following software installations:

  • Statistics::Basic (extension)

    Statistics::Basic is a Perl module that is included as extension in the following software installations:

  • Statistics::Descriptive (extension)

    Statistics::Descriptive is a Perl module that is included as extension in the following software installations:

  • StatMatch (extension)

    StatMatch is a R library that is included as extension in the following software installations:

  • statmod (extension)

    statmod is a R library that is included as extension in the following software installations:

  • statnet (extension)

    statnet is a R library that is included as extension in the following software installations:

  • statnet.common (extension)

    statnet.common is a R library that is included as extension in the following software installations:

  • statsmodels (extension)

    statsmodels is a Python package that is included as extension in the following software installations:

  • statsmodels (more details)
    https://www.statsmodels.org

    Statsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • stdlib_list (extension)

    stdlib_list is a Python package that is included as extension in the following software installations:

  • stdReg (extension)

    stdReg is a R library that is included as extension in the following software installations:

  • stopit (extension)

    stopit is a Python package that is included as extension in the following software installations:

  • stopwords (extension)

    stopwords is a R library that is included as extension in the following software installations:

  • Storable (extension)

    Storable is a Perl module that is included as extension in the following software installations:

  • strictures (extension)

    strictures is a Perl module that is included as extension in the following software installations:

  • String::Errf (extension)

    String::Errf is a Perl module that is included as extension in the following software installations:

  • String::Flogger (extension)

    String::Flogger is a Perl module that is included as extension in the following software installations:

  • String::Formatter (extension)

    String::Formatter is a Perl module that is included as extension in the following software installations:

  • String::Print (extension)

    String::Print is a Perl module that is included as extension in the following software installations:

  • String::RewritePrefix (extension)

    String::RewritePrefix is a Perl module that is included as extension in the following software installations:

  • String::Truncate (extension)

    String::Truncate is a Perl module that is included as extension in the following software installations:

  • String::TtyLength (extension)

    String::TtyLength is a Perl module that is included as extension in the following software installations:

  • stringdist (extension)

    stringdist is a R library that is included as extension in the following software installations:

  • stringi (extension)

    stringi is a R library that is included as extension in the following software installations:

  • stringmagic (extension)

    stringmagic is a R library that is included as extension in the following software installations:

  • stringr (extension)

    stringr is a R library that is included as extension in the following software installations:

  • strucchange (extension)

    strucchange is a R library that is included as extension in the following software installations:

  • struct (extension)

    struct is a that is included as extension in the following software installations:

  • struct (extension)

    struct is a R library that is included as extension in the following software installations:

  • structToolbox (extension)

    structToolbox is a R library that is included as extension in the following software installations:

  • styler (extension)

    styler is a R library that is included as extension in the following software installations:

  • Sub::Exporter (extension)

    Sub::Exporter is a Perl module that is included as extension in the following software installations:

  • Sub::Exporter::ForMethods (extension)

    Sub::Exporter::ForMethods is a Perl module that is included as extension in the following software installations:

  • Sub::Exporter::GlobExporter (extension)

    Sub::Exporter::GlobExporter is a Perl module that is included as extension in the following software installations:

  • Sub::Exporter::Progressive (extension)

    Sub::Exporter::Progressive is a Perl module that is included as extension in the following software installations:

  • Sub::Identify (extension)

    Sub::Identify is a Perl module that is included as extension in the following software installations:

  • Sub::Info (extension)

    Sub::Info is a Perl module that is included as extension in the following software installations:

  • Sub::Install (extension)

    Sub::Install is a Perl module that is included as extension in the following software installations:

  • Sub::Name (extension)

    Sub::Name is a Perl module that is included as extension in the following software installations:

  • Sub::Quote (extension)

    Sub::Quote is a Perl module that is included as extension in the following software installations:

  • Sub::Uplevel (extension)

    Sub::Uplevel is a Perl module that is included as extension in the following software installations:

  • subplex (extension)

    subplex is a R library that is included as extension in the following software installations:

  • Subread (more details)
    https://subread.sourceforge.net

    High performance read alignment, quantification and mutation discovery

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SuiteSparse (more details)
    https://faculty.cse.tamu.edu/davis/suitesparse.html

    SuiteSparse is a collection of libraries to manipulate sparse matrices.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SummarizedExperiment (extension)

    SummarizedExperiment is a R library that is included as extension in the following software installations:

  • SUNDIALS (more details)
    https://computing.llnl.gov/projects/sundials

    SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SuperLearner (extension)

    SuperLearner is a R library that is included as extension in the following software installations:

  • SuperLU_DIST (more details)
    https://crd-legacy.lbl.gov/~xiaoye/SuperLU

    SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • SuppDists (extension)

    SuppDists is a R library that is included as extension in the following software installations:

  • survey (extension)

    survey is a R library that is included as extension in the following software installations:

  • survival (extension)

    survival is a R library that is included as extension in the following software installations:

  • survivalROC (extension)

    survivalROC is a R library that is included as extension in the following software installations:

  • susieR (extension)

    susieR is a R library that is included as extension in the following software installations:

  • sva (extension)

    sva is a R library that is included as extension in the following software installations:

  • svd (extension)

    svd is a R library that is included as extension in the following software installations:

  • SVG (extension)

    SVG is a Perl module that is included as extension in the following software installations:

  • svglite (extension)

    svglite is a R library that is included as extension in the following software installations:

  • SVT-AV1 (more details)
    https://gitlab.com/AOMediaCodec/SVT-AV1

    The Scalable Video Technology for AV1 (SVT-AV1 Encoder) is an AV1-compliant software encoder library. The work on the SVT-AV1 encoder targets the development of a production-quality AV1-encoder with performance levels applicable to a wide range of applications, from premium VOD to real-time and live encoding/transcoding.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • svUnit (extension)

    svUnit is a R library that is included as extension in the following software installations:

  • swagger (extension)

    swagger is a R library that is included as extension in the following software installations:

  • SWIG (more details)
    http://www.swig.org

    SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Switch (extension)

    Switch is a Perl module that is included as extension in the following software installations:

  • symmoments (extension)

    symmoments is a R library that is included as extension in the following software installations:

  • sympy (more details)
    https://sympy.org

    SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • sys (extension)

    sys is a R library that is included as extension in the following software installations:

  • Sys::Info (extension)

    Sys::Info is a Perl module that is included as extension in the following software installations:

  • Sys::Info::Base (extension)

    Sys::Info::Base is a Perl module that is included as extension in the following software installations:

  • Sys::Info::Driver::Linux (extension)

    Sys::Info::Driver::Linux is a Perl module that is included as extension in the following software installations:

  • Sys::Info::Driver::Unknown (extension)

    Sys::Info::Driver::Unknown is a Perl module that is included as extension in the following software installations:

  • systemfonts (extension)

    systemfonts is a R library that is included as extension in the following software installations:

  • Szip (more details)
    https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html, https://www.hdfgroup.org/doc_resource/SZIP

    Szip compression software, providing lossless compression of scientific data

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • t (extension)

    t is a R library that is included as extension in the following software installations:

  • tableone (extension)

    tableone is a R library that is included as extension in the following software installations:

  • tables (extension)

    tables is a Python package that is included as extension in the following software installations:

  • tabletools (extension)

    tabletools is a R library that is included as extension in the following software installations:

  • tabulate (extension)

    tabulate is a Python package that is included as extension in the following software installations:

  • TailRank (extension)

    TailRank is a R library that is included as extension in the following software installations:

  • tau (extension)

    tau is a R library that is included as extension in the following software installations:

  • taxize (extension)

    taxize is a R library that is included as extension in the following software installations:

  • tbb (more details)
    https://github.com/oneapi-src/oneTBB

    Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tblib (extension)

    tblib is a Python package that is included as extension in the following software installations:

  • tblite (extension)

    tblite is a Python package that is included as extension in the following software installations:

  • tblite (more details)
    https://github.com/tblite/tblite

    Light-weight tight-binding framework

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Tcl (more details)
    https://www.tcl.tk

    Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tcltk2 (extension)

    tcltk2 is a R library that is included as extension in the following software installations:

  • tclust (extension)

    tclust is a R library that is included as extension in the following software installations:

  • tcsh (more details)
    https://www.tcsh.org

    Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • TeachingDemos (extension)

    TeachingDemos is a R library that is included as extension in the following software installations:

  • Template (extension)

    Template is a Perl module that is included as extension in the following software installations:

  • Template::Plugin::Number::Format (extension)

    Template::Plugin::Number::Format is a Perl module that is included as extension in the following software installations:

  • tenacity (extension)

    tenacity is a Python package that is included as extension in the following software installations:

  • tensor (extension)

    tensor is a R library that is included as extension in the following software installations:

  • tensorA (extension)

    tensorA is a R library that is included as extension in the following software installations:

  • tensorboard (extension)

    tensorboard is a Python package that is included as extension in the following software installations:

  • tensorboard (more details)
    https://github.com/tensorflow/tensorboard

    TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runs and graphs.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tensorboard-data-server (extension)

    tensorboard-data-server is a Python package that is included as extension in the following software installations:

  • tensorboard-plugin-profile (extension)

    tensorboard-plugin-profile is a Python package that is included as extension in the following software installations:

  • tensorboard-plugin-wit (extension)

    tensorboard-plugin-wit is a Python package that is included as extension in the following software installations:

  • tensorboard_data_server (extension)

    tensorboard_data_server is a Python package that is included as extension in the following software installations:

  • TensorFlow (extension)

    TensorFlow is a Python package that is included as extension in the following software installations:

  • TensorFlow (more details)
    https://www.tensorflow.org

    An open-source software library for Machine Intelligence

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tensorflow-estimator (extension)

    tensorflow-estimator is a Python package that is included as extension in the following software installations:

  • tensorflow-probability (extension)

    tensorflow-probability is a Python package that is included as extension in the following software installations:

  • tensorflow-probability (more details)
    https://www.tensorflow.org/probability

    TensorFlow Probability (TFP) is a library for probabilistic reasoning and statistical analysis.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tergm (extension)

    tergm is a R library that is included as extension in the following software installations:

  • Term::Encoding (extension)

    Term::Encoding is a Perl module that is included as extension in the following software installations:

  • Term::ReadKey (extension)

    Term::ReadKey is a Perl module that is included as extension in the following software installations:

  • Term::ReadLine::Gnu (extension)

    Term::ReadLine::Gnu is a Perl module that is included as extension in the following software installations:

  • Term::Table (extension)

    Term::Table is a Perl module that is included as extension in the following software installations:

  • Term::UI (extension)

    Term::UI is a Perl module that is included as extension in the following software installations:

  • termcolor (extension)

    termcolor is a Python package that is included as extension in the following software installations:

  • terminado (extension)

    terminado is a Python package that is included as extension in the following software installations:

  • terra (extension)

    terra is a R library that is included as extension in the following software installations:

  • Test (extension)

    Test is a Perl module that is included as extension in the following software installations:

  • test-drive (more details)
    https://github.com/fortran-lang/test-drive

    This project offers a lightweight, procedural unit testing framework based on nothing but standard Fortran.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Test2::Plugin::NoWarnings (extension)

    Test2::Plugin::NoWarnings is a Perl module that is included as extension in the following software installations:

  • Test2::Require::Module (extension)

    Test2::Require::Module is a Perl module that is included as extension in the following software installations:

  • Test::Base (extension)

    Test::Base is a Perl module that is included as extension in the following software installations:

  • Test::CheckDeps (extension)

    Test::CheckDeps is a Perl module that is included as extension in the following software installations:

  • Test::ClassAPI (extension)

    Test::ClassAPI is a Perl module that is included as extension in the following software installations:

  • Test::CleanNamespaces (extension)

    Test::CleanNamespaces is a Perl module that is included as extension in the following software installations:

  • Test::Deep (extension)

    Test::Deep is a Perl module that is included as extension in the following software installations:

  • Test::Differences (extension)

    Test::Differences is a Perl module that is included as extension in the following software installations:

  • Test::Exception (extension)

    Test::Exception is a Perl module that is included as extension in the following software installations:

  • Test::FailWarnings (extension)

    Test::FailWarnings is a Perl module that is included as extension in the following software installations:

  • Test::Fatal (extension)

    Test::Fatal is a Perl module that is included as extension in the following software installations:

  • Test::File (extension)

    Test::File is a Perl module that is included as extension in the following software installations:

  • Test::File::ShareDir::Dist (extension)

    Test::File::ShareDir::Dist is a Perl module that is included as extension in the following software installations:

  • Test::Harness (extension)

    Test::Harness is a Perl module that is included as extension in the following software installations:

  • Test::LeakTrace (extension)

    Test::LeakTrace is a Perl module that is included as extension in the following software installations:

  • Test::Memory::Cycle (extension)

    Test::Memory::Cycle is a Perl module that is included as extension in the following software installations:

  • Test::More (extension)

    Test::More is a Perl module that is included as extension in the following software installations:

  • Test::More::UTF8 (extension)

    Test::More::UTF8 is a Perl module that is included as extension in the following software installations:

  • Test::Most (extension)

    Test::Most is a Perl module that is included as extension in the following software installations:

  • Test::Needs (extension)

    Test::Needs is a Perl module that is included as extension in the following software installations:

  • Test::NoWarnings (extension)

    Test::NoWarnings is a Perl module that is included as extension in the following software installations:

  • Test::Object (extension)

    Test::Object is a Perl module that is included as extension in the following software installations:

  • Test::Output (extension)

    Test::Output is a Perl module that is included as extension in the following software installations:

  • Test::Pod (extension)

    Test::Pod is a Perl module that is included as extension in the following software installations:

  • Test::Requires (extension)

    Test::Requires is a Perl module that is included as extension in the following software installations:

  • Test::RequiresInternet (extension)

    Test::RequiresInternet is a Perl module that is included as extension in the following software installations:

  • Test::Simple (extension)

    Test::Simple is a Perl module that is included as extension in the following software installations:

  • Test::SubCalls (extension)

    Test::SubCalls is a Perl module that is included as extension in the following software installations:

  • Test::Sys::Info (extension)

    Test::Sys::Info is a Perl module that is included as extension in the following software installations:

  • Test::Version (extension)

    Test::Version is a Perl module that is included as extension in the following software installations:

  • Test::Warn (extension)

    Test::Warn is a Perl module that is included as extension in the following software installations:

  • Test::Warnings (extension)

    Test::Warnings is a Perl module that is included as extension in the following software installations:

  • Test::Without::Module (extension)

    Test::Without::Module is a Perl module that is included as extension in the following software installations:

  • Test::YAML (extension)

    Test::YAML is a Perl module that is included as extension in the following software installations:

  • testit (extension)

    testit is a R library that is included as extension in the following software installations:

  • testthat (extension)

    testthat is a R library that is included as extension in the following software installations:

  • texreg (extension)

    texreg is a R library that is included as extension in the following software installations:

  • Text::Aligner (extension)

    Text::Aligner is a Perl module that is included as extension in the following software installations:

  • Text::Balanced (extension)

    Text::Balanced is a Perl module that is included as extension in the following software installations:

  • Text::CSV (extension)

    Text::CSV is a Perl module that is included as extension in the following software installations:

  • Text::CSV_XS (extension)

    Text::CSV_XS is a Perl module that is included as extension in the following software installations:

  • Text::Diff (extension)

    Text::Diff is a Perl module that is included as extension in the following software installations:

  • Text::Format (extension)

    Text::Format is a Perl module that is included as extension in the following software installations:

  • Text::Glob (extension)

    Text::Glob is a Perl module that is included as extension in the following software installations:

  • Text::Iconv (extension)

    Text::Iconv is a Perl module that is included as extension in the following software installations:

  • Text::ParseWords (extension)

    Text::ParseWords is a Perl module that is included as extension in the following software installations:

  • Text::Soundex (extension)

    Text::Soundex is a Perl module that is included as extension in the following software installations:

  • Text::Table (extension)

    Text::Table is a Perl module that is included as extension in the following software installations:

  • Text::Table::Manifold (extension)

    Text::Table::Manifold is a Perl module that is included as extension in the following software installations:

  • Text::Template (extension)

    Text::Template is a Perl module that is included as extension in the following software installations:

  • textcat (extension)

    textcat is a R library that is included as extension in the following software installations:

  • textplot (extension)

    textplot is a R library that is included as extension in the following software installations:

  • textshaping (extension)

    textshaping is a R library that is included as extension in the following software installations:

  • textual (extension)

    textual is a Python package that is included as extension in the following software installations:

  • textual-plotext (extension)

    textual-plotext is a Python package that is included as extension in the following software installations:

  • TFBSTools (extension)

    TFBSTools is a R library that is included as extension in the following software installations:

  • TFisher (extension)

    TFisher is a R library that is included as extension in the following software installations:

  • TFMPvalue (extension)

    TFMPvalue is a R library that is included as extension in the following software installations:

  • TH.data (extension)

    TH.data is a R library that is included as extension in the following software installations:

  • threach (extension)

    threach is a that is included as extension in the following software installations:

  • Thread::Queue (extension)

    Thread::Queue is a Perl module that is included as extension in the following software installations:

  • thread_safe (extension)

    thread_safe is a that is included as extension in the following software installations:

  • threadpoolctl (extension)

    threadpoolctl is a Python package that is included as extension in the following software installations:

  • threads (extension)

    threads is a Perl module that is included as extension in the following software installations:

  • threejs (extension)

    threejs is a R library that is included as extension in the following software installations:

  • throttler (extension)

    throttler is a Python package that is included as extension in the following software installations:

  • Throwable (extension)

    Throwable is a Perl module that is included as extension in the following software installations:

  • tibble (extension)

    tibble is a R library that is included as extension in the following software installations:

  • tictoc (extension)

    tictoc is a R library that is included as extension in the following software installations:

  • tidybayes (extension)

    tidybayes is a R library that is included as extension in the following software installations:

  • tidygraph (extension)

    tidygraph is a R library that is included as extension in the following software installations:

  • tidyr (extension)

    tidyr is a R library that is included as extension in the following software installations:

  • tidyselect (extension)

    tidyselect is a R library that is included as extension in the following software installations:

  • tidytext (extension)

    tidytext is a R library that is included as extension in the following software installations:

  • tidytree (extension)

    tidytree is a R library that is included as extension in the following software installations:

  • tidyverse (extension)

    tidyverse is a R library that is included as extension in the following software installations:

  • Tie::Function (extension)

    Tie::Function is a Perl module that is included as extension in the following software installations:

  • Tie::IxHash (extension)

    Tie::IxHash is a Perl module that is included as extension in the following software installations:

  • tiff (extension)

    tiff is a R library that is included as extension in the following software installations:

  • tilt (extension)

    tilt is a that is included as extension in the following software installations:

  • time (more details)
    https://www.gnu.org/software/time

    The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Time::HiRes (extension)

    Time::HiRes is a Perl module that is included as extension in the following software installations:

  • Time::Local (extension)

    Time::Local is a Perl module that is included as extension in the following software installations:

  • Time::Piece (extension)

    Time::Piece is a Perl module that is included as extension in the following software installations:

  • Time::Piece::MySQL (extension)

    Time::Piece::MySQL is a Perl module that is included as extension in the following software installations:

  • timechange (extension)

    timechange is a R library that is included as extension in the following software installations:

  • timeDate (extension)

    timeDate is a R library that is included as extension in the following software installations:

  • timereg (extension)

    timereg is a R library that is included as extension in the following software installations:

  • timeSeries (extension)

    timeSeries is a R library that is included as extension in the following software installations:

  • tint2 (more details)
    https://gitlab.com/o9000/tint2

    A lightweight panel/taskbar for Linux desktops.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tinycss2 (extension)

    tinycss2 is a Python package that is included as extension in the following software installations:

  • tinytex (extension)

    tinytex is a R library that is included as extension in the following software installations:

  • Tk (more details)
    https://www.tcl.tk

    Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Tkinter (more details)
    https://python.org

    Tkinter module, built with the Python buildsystem

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tkrplot (extension)

    tkrplot is a R library that is included as extension in the following software installations:

  • tkWidgets (extension)

    tkWidgets is a R library that is included as extension in the following software installations:

  • tlparse (more details)
    https://github.com/ezyang/tlparse

    Parse structured PT2 (PyTorch 2) logs

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tm (extension)

    tm is a R library that is included as extension in the following software installations:

  • tmap (extension)

    tmap is a R library that is included as extension in the following software installations:

  • tmaptools (extension)

    tmaptools is a R library that is included as extension in the following software installations:

  • TMB (extension)

    TMB is a R library that is included as extension in the following software installations:

  • tmle (extension)

    tmle is a R library that is included as extension in the following software installations:

  • tmux (more details)
    https://github.com/tmux/tmux

    tmux is a terminal multiplexer: it enables a number of terminals to be created, accessed, and controlled from a single screen. tmux may be detached from a screen and continue running in the background, then later reattached.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tmvnsim (extension)

    tmvnsim is a R library that is included as extension in the following software installations:

  • tmvtnorm (extension)

    tmvtnorm is a R library that is included as extension in the following software installations:

  • toil (extension)

    toil is a Python package that is included as extension in the following software installations:

  • toil-cwl (more details)
    https://github.com/DataBiosphere/toil

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python. This installation contains toil, with the cwl extras.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tokenizers (extension)

    tokenizers is a R library that is included as extension in the following software installations:

  • Tombo (more details)
    https://github.com/nanoporetech/tombo

    Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • toml (extension)

    toml is a Python package that is included as extension in the following software installations:

  • TOML-Fortran (more details)
    https://github.com/toml-f/toml-f

    TOML parser for Fortran projects

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tomli (extension)

    tomli is a Python package that is included as extension in the following software installations:

  • tomli-w (extension)

    tomli-w is a Python package that is included as extension in the following software installations:

  • tomli_w (extension)

    tomli_w is a Python package that is included as extension in the following software installations:

  • tomlkit (extension)

    tomlkit is a Python package that is included as extension in the following software installations:

  • toolz (extension)

    toolz is a Python package that is included as extension in the following software installations:

  • topicmodels (extension)

    topicmodels is a R library that is included as extension in the following software installations:

  • toposort (extension)

    toposort is a Python package that is included as extension in the following software installations:

  • tornado (extension)

    tornado is a Python package that is included as extension in the following software installations:

  • tornado (more details)
    https://github.com/tornadoweb/tornado

    Tornado is a Python web framework and asynchronous networking library.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tqdm (extension)

    tqdm is a Python package that is included as extension in the following software installations:

  • tqdm (more details)
    https://github.com/tqdm/tqdm

    A fast, extensible progress bar for Python and CLI

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • traitlets (extension)

    traitlets is a Python package that is included as extension in the following software installations:

  • TrajectoryUtils (extension)

    TrajectoryUtils is a R library that is included as extension in the following software installations:

  • TraMineR (extension)

    TraMineR is a R library that is included as extension in the following software installations:

  • Transrate (more details)
    https://hibberdlab.com/transrate

    Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and parameters, filter out the bad contigs from an assembly, and help decide when to stop trying to improve the assembly.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tree (extension)

    tree is a R library that is included as extension in the following software installations:

  • Tree::DAG_Node (extension)

    Tree::DAG_Node is a Perl module that is included as extension in the following software installations:

  • treeio (extension)

    treeio is a R library that is included as extension in the following software installations:

  • TreeSummarizedExperiment (extension)

    TreeSummarizedExperiment is a R library that is included as extension in the following software installations:

  • triebeard (extension)

    triebeard is a R library that is included as extension in the following software installations:

  • trimcluster (extension)

    trimcluster is a R library that is included as extension in the following software installations:

  • Trimmomatic (more details)
    http://www.usadellab.org/cms/?page=trimmomatic

    Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • tripack (extension)

    tripack is a R library that is included as extension in the following software installations:

  • trogon (extension)

    trogon is a Python package that is included as extension in the following software installations:

  • trollop (extension)

    trollop is a that is included as extension in the following software installations:

  • trove-classifiers (extension)

    trove-classifiers is a Python package that is included as extension in the following software installations:

  • trove_classifiers (extension)

    trove_classifiers is a Python package that is included as extension in the following software installations:

  • TruncatedNormal (extension)

    TruncatedNormal is a R library that is included as extension in the following software installations:

  • truncnorm (extension)

    truncnorm is a R library that is included as extension in the following software installations:

  • trust (extension)

    trust is a R library that is included as extension in the following software installations:

  • Try::Tiny (extension)

    Try::Tiny is a Perl module that is included as extension in the following software installations:

  • tseries (extension)

    tseries is a R library that is included as extension in the following software installations:

  • tseriesChaos (extension)

    tseriesChaos is a R library that is included as extension in the following software installations:

  • tsna (extension)

    tsna is a R library that is included as extension in the following software installations:

  • tsne (extension)

    tsne is a R library that is included as extension in the following software installations:

  • TSP (extension)

    TSP is a R library that is included as extension in the following software installations:

  • TTR (extension)

    TTR is a R library that is included as extension in the following software installations:

  • tuneR (extension)

    tuneR is a R library that is included as extension in the following software installations:

  • TurboVNC (more details)
    https://www.turbovnc.org

    TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • twang (extension)

    twang is a R library that is included as extension in the following software installations:

  • tweedie (extension)

    tweedie is a R library that is included as extension in the following software installations:

  • tweenr (extension)

    tweenr is a R library that is included as extension in the following software installations:

  • TxDb.Hsapiens.UCSC.hg19.knownGene (extension)

    TxDb.Hsapiens.UCSC.hg19.knownGene is a R library that is included as extension in the following software installations:

  • TxDb.Mmusculus.UCSC.mm10.knownGene (extension)

    TxDb.Mmusculus.UCSC.mm10.knownGene is a R library that is included as extension in the following software installations:

  • txdbmaker (extension)

    txdbmaker is a R library that is included as extension in the following software installations:

  • tximport (extension)

    tximport is a R library that is included as extension in the following software installations:

  • Type::Tiny (extension)

    Type::Tiny is a Perl module that is included as extension in the following software installations:

  • Types::Serialiser (extension)

    Types::Serialiser is a Perl module that is included as extension in the following software installations:

  • typhoeus (extension)

    typhoeus is a that is included as extension in the following software installations:

  • typing-extensions (extension)

    typing-extensions is a Python package that is included as extension in the following software installations:

  • typing-extensions (more details)
    https://github.com/python/typing_extensions, https://github.com/python/typing/blob/master/typing_extensions/README.rst

    Typing Extensions - Backported and Experimental Type Hints for Python

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • typing_extensions (extension)

    typing_extensions is a Python package that is included as extension in the following software installations:

  • tzdata (extension)

    tzdata is a Python package that is included as extension in the following software installations:

  • tzdb (extension)

    tzdb is a R library that is included as extension in the following software installations:

  • tzinfo (extension)

    tzinfo is a that is included as extension in the following software installations:

  • tzlocal (extension)

    tzlocal is a Python package that is included as extension in the following software installations:

  • u (extension)

    u is a R library that is included as extension in the following software installations:

  • UCC (more details)
    https://www.openucx.org

    UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • UCC-CUDA (more details)
    https://www.openucx.org

    UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • UCell (extension)

    UCell is a R library that is included as extension in the following software installations:

  • ucminf (extension)

    ucminf is a R library that is included as extension in the following software installations:

  • UCSC.utils (extension)

    UCSC.utils is a R library that is included as extension in the following software installations:

  • UCX (more details)
    https://www.openucx.org

    Unified Communication X An open-source production grade communication framework for data centric and high-performance applications

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • UCX-CUDA (more details)
    http://www.openucx.org

    Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: NVIDIA

  • udpipe (extension)

    udpipe is a R library that is included as extension in the following software installations:

  • UDUNITS (more details)
    https://www.unidata.ucar.edu/software/udunits

    UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • ujson (extension)

    ujson is a Python package that is included as extension in the following software installations:

  • umap (extension)

    umap is a R library that is included as extension in the following software installations:

  • umap-learn (extension)

    umap-learn is a Python package that is included as extension in the following software installations:

  • umap-learn (more details)
    https://umap-learn.readthedocs.io/en/latest

    Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • unbalanced (extension)

    unbalanced is a R library that is included as extension in the following software installations:

  • uncertainties (more details)
    http://uncertainties-python-package.readthedocs.io

    Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Unicode::EastAsianWidth (extension)

    Unicode::EastAsianWidth is a Perl module that is included as extension in the following software installations:

  • Unicode::LineBreak (extension)

    Unicode::LineBreak is a Perl module that is included as extension in the following software installations:

  • unifdef (more details)
    https://github.com/fanf2/unifdef

    unifdef - selectively remove C preprocessor conditionals The unifdef utility selectively processes conditional C preprocessor and the additional text that they delimit, while otherwise leaving the file alone.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • unikn (extension)

    unikn is a R library that is included as extension in the following software installations:

  • uniqueAtomMat (extension)

    uniqueAtomMat is a R library that is included as extension in the following software installations:

  • units (extension)

    units is a R library that is included as extension in the following software installations:

  • unittest-xml-reporting (more details)
    http://github.com/xmlrunner/unittest-xml-reporting

    A unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • UNIVERSAL::moniker (extension)

    UNIVERSAL::moniker is a Perl module that is included as extension in the following software installations:

  • universalmotif (extension)

    universalmotif is a R library that is included as extension in the following software installations:

  • Unix::Processors (extension)

    Unix::Processors is a Perl module that is included as extension in the following software installations:

  • unixODBC (more details)
    https://www.unixodbc.org

    unixODBC provides a uniform interface between application and database driver

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • unmarked (extension)

    unmarked is a R library that is included as extension in the following software installations:

  • UnZip (more details)
    http://www.info-zip.org/UnZip.html

    UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • upf-to-json (extension)

    upf-to-json is a Python package that is included as extension in the following software installations:

  • UpSetR (extension)

    UpSetR is a R library that is included as extension in the following software installations:

  • urca (extension)

    urca is a R library that is included as extension in the following software installations:

  • URI (extension)

    URI is a Perl module that is included as extension in the following software installations:

  • URI::Escape (extension)

    URI::Escape is a Perl module that is included as extension in the following software installations:

  • urlchecker (extension)

    urlchecker is a R library that is included as extension in the following software installations:

  • urllib3 (extension)

    urllib3 is a Python package that is included as extension in the following software installations:

  • urltools (extension)

    urltools is a R library that is included as extension in the following software installations:

  • uroot (extension)

    uroot is a R library that is included as extension in the following software installations:

  • usethis (extension)

    usethis is a R library that is included as extension in the following software installations:

  • utf8 (extension)

    utf8 is a R library that is included as extension in the following software installations:

  • utf8proc (more details)
    https://github.com/JuliaStrings/utf8proc

    utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • uthash (more details)
    https://troydhanson.github.io/uthash

    Austin is a Python frame stack sampler for CPython written in pure C.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • uuid (extension)

    uuid is a R library that is included as extension in the following software installations:

  • uvicorn (extension)

    uvicorn is a Python package that is included as extension in the following software installations:

  • uwot (extension)

    uwot is a R library that is included as extension in the following software installations:

  • V8 (extension)

    V8 is a R library that is included as extension in the following software installations:

  • Vala (more details)
    https://wiki.gnome.org/Projects/Vala

    Vala is a programming language using modern high level abstractions without imposing additional runtime requirements and without using a different ABI compared to applications and libraries written in C.

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Valgrind (more details)
    https://valgrind.org

    Valgrind: Debugging and profiling tools

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • varhandle (extension)

    varhandle is a R library that is included as extension in the following software installations:

  • Variable::Magic (extension)

    Variable::Magic is a Perl module that is included as extension in the following software installations:

  • variancePartition (extension)

    variancePartition is a R library that is included as extension in the following software installations:

  • VariantAnnotation (extension)

    VariantAnnotation is a R library that is included as extension in the following software installations:

  • vcd (extension)

    vcd is a R library that is included as extension in the following software installations:

  • vcfR (extension)

    vcfR is a R library that is included as extension in the following software installations:

  • VCFtools (more details)
    https://vcftools.github.io

    The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • vctrs (extension)

    vctrs is a R library that is included as extension in the following software installations:

  • vegan (extension)

    vegan is a R library that is included as extension in the following software installations:

  • VeloxChem (extension)

    VeloxChem is a Python package that is included as extension in the following software installations:

  • VeloxChem (more details)
    https://veloxchem.org/docs/intro.html

    VeloxChem [RLV+20] is a Python-based open source quantum chemistry software for contemporary and future hardware architectures. It features interactive program access through Jupyter notebooks as well as massively parallel calculations in high-performance computing (HPC) environments.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • venn (extension)

    venn is a R library that is included as extension in the following software installations:

  • VennDiagram (extension)

    VennDiagram is a R library that is included as extension in the following software installations:

  • version (extension)

    version is a Perl module that is included as extension in the following software installations:

  • versioneer (extension)

    versioneer is a Python package that is included as extension in the following software installations:

  • VGAM (extension)

    VGAM is a R library that is included as extension in the following software installations:

  • VIM (extension)

    VIM is a R library that is included as extension in the following software installations:

  • Vim (more details)
    http://www.vim.org

    Vim is an advanced text editor that seeks to provide the power of the de-facto Unix editor 'Vi', with a more complete feature set.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • VineCopula (extension)

    VineCopula is a R library that is included as extension in the following software installations:

  • vioplot (extension)

    vioplot is a R library that is included as extension in the following software installations:

  • vipor (extension)

    vipor is a R library that is included as extension in the following software installations:

  • viridis (extension)

    viridis is a R library that is included as extension in the following software installations:

  • viridisLite (extension)

    viridisLite is a R library that is included as extension in the following software installations:

  • virtualenv (extension)

    virtualenv is a Python package that is included as extension in the following software installations:

  • virtualenv (more details)
    https://github.com/pypa/virtualenv

    A tool for creating isolated virtual python environments.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • visdat (extension)

    visdat is a R library that is included as extension in the following software installations:

  • visNetwork (extension)

    visNetwork is a R library that is included as extension in the following software installations:

  • volk (extension)

    volk is a that is included as extension in the following software installations:

  • Voro++ (more details)
    http://math.lbl.gov/voro++

    Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • vroom (extension)

    vroom is a R library that is included as extension in the following software installations:

  • VSEARCH (more details)
    https://github.com/torognes/vsearch

    VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • vsn (extension)

    vsn is a R library that is included as extension in the following software installations:

  • VSURF (extension)

    VSURF is a R library that is included as extension in the following software installations:

  • VTK (more details)
    https://www.vtk.org

    The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Vulkan (more details)
    https://github.com/KhronosGroup

    Vulkan headers, ICDs, and tools

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Vulkan-Headers (extension)

    Vulkan-Headers is a that is included as extension in the following software installations:

  • Vulkan-Loader (extension)

    Vulkan-Loader is a that is included as extension in the following software installations:

  • Vulkan-Tools (extension)

    Vulkan-Tools is a that is included as extension in the following software installations:

  • waiter (extension)

    waiter is a R library that is included as extension in the following software installations:

  • waLBerla (more details)
    https://walberla.net/index.html

    Widely applicable Lattics-Boltzmann from Erlangen is a block-structured high-performance framework for multiphysics simulations

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • waldo (extension)

    waldo is a R library that is included as extension in the following software installations:

  • Want (extension)

    Want is a Perl module that is included as extension in the following software installations:

  • warp (extension)

    warp is a R library that is included as extension in the following software installations:

  • wateRmelon (extension)

    wateRmelon is a R library that is included as extension in the following software installations:

  • waveslim (extension)

    waveslim is a R library that is included as extension in the following software installations:

  • wayland (extension)

    wayland is a that is included as extension in the following software installations:

  • Wayland (more details)
    https://wayland.freedesktop.org

    Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • wayland-protocols (extension)

    wayland-protocols is a that is included as extension in the following software installations:

  • wayland-utils (extension)

    wayland-utils is a that is included as extension in the following software installations:

  • Waylandpp (more details)
    https://github.com/NilsBrause/waylandpp

    Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding. The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • WCSLIB (more details)
    https://www.atnf.csiro.au/people/mcalabre/WCS

    The FITS "World Coordinate System" (WCS) standard defines keywords and usage that provide for the description of astronomical coordinate systems in a FITS image header.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • wcwidth (extension)

    wcwidth is a Python package that is included as extension in the following software installations:

  • wdm (extension)

    wdm is a R library that is included as extension in the following software installations:

  • webencodings (extension)

    webencodings is a Python package that is included as extension in the following software installations:

  • WebKitGTK+ (more details)
    https://webkitgtk.org

    WebKitGTK+ is a full-featured port of the WebKit rendering engine, suitable for projects requiring any kind of web integration, from hybrid HTML/CSS applications to full-fledged web browsers. It offers WebKit's full functionality and is useful in a wide range of systems from desktop computers to embedded systems like phones, tablets, and televisions.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • webshot (extension)

    webshot is a R library that is included as extension in the following software installations:

  • websocket (extension)

    websocket is a that is included as extension in the following software installations:

  • websocket-client (extension)

    websocket-client is a Python package that is included as extension in the following software installations:

  • websocket_client (extension)

    websocket_client is a Python package that is included as extension in the following software installations:

  • websockify (extension)

    websockify is a Python package that is included as extension in the following software installations:

  • websockify (more details)
    https://github.com/novnc/websockify

    WebSockets support for any application/server

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • webutils (extension)

    webutils is a R library that is included as extension in the following software installations:

  • weights (extension)

    weights is a R library that is included as extension in the following software installations:

  • WeightSVM (extension)

    WeightSVM is a R library that is included as extension in the following software installations:

  • wellknown (extension)

    wellknown is a R library that is included as extension in the following software installations:

  • Werkzeug (extension)

    Werkzeug is a Python package that is included as extension in the following software installations:

  • werkzeug (extension)

    werkzeug is a Python package that is included as extension in the following software installations:

  • WGCNA (extension)

    WGCNA is a R library that is included as extension in the following software installations:

  • wget (more details)
    https://www.gnu.org/software/wget

    GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • WhatsHap (extension)

    WhatsHap is a Python package that is included as extension in the following software installations:

  • whatshap (extension)

    whatshap is a Python package that is included as extension in the following software installations:

  • WhatsHap (more details)
    https://whatshap.readthedocs.io

    WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • wheel (extension)

    wheel is a Python package that is included as extension in the following software installations:

  • whisker (extension)

    whisker is a R library that is included as extension in the following software installations:

  • widgetframe (extension)

    widgetframe is a R library that is included as extension in the following software installations:

  • widgetsnbextension (extension)

    widgetsnbextension is a Python package that is included as extension in the following software installations:

  • widgetTools (extension)

    widgetTools is a R library that is included as extension in the following software installations:

  • WikidataQueryServiceR (extension)

    WikidataQueryServiceR is a R library that is included as extension in the following software installations:

  • WikidataR (extension)

    WikidataR is a R library that is included as extension in the following software installations:

  • WikipediR (extension)

    WikipediR is a R library that is included as extension in the following software installations:

  • wikitaxa (extension)

    wikitaxa is a R library that is included as extension in the following software installations:

  • withr (extension)

    withr is a R library that is included as extension in the following software installations:

  • wk (extension)

    wk is a R library that is included as extension in the following software installations:

  • wlroots (extension)

    wlroots is a that is included as extension in the following software installations:

  • word2vec (extension)

    word2vec is a R library that is included as extension in the following software installations:

  • wordcloud (extension)

    wordcloud is a R library that is included as extension in the following software installations:

  • worrms (extension)

    worrms is a R library that is included as extension in the following software installations:

  • wpebackend-fdo (more details)
    https://wpewebkit.org

    WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • wradlib (extension)

    wradlib is a Python package that is included as extension in the following software installations:

  • wradlib (more details)
    https://docs.wradlib.org

    The wradlib project has been initiated in order to facilitate the use of weather radar data as well as to provide a common platform for research on new algorithms.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • wrapt (extension)

    wrapt is a Python package that is included as extension in the following software installations:

  • wrapt (more details)
    https://pypi.org/project/wrapt

    The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Wrench (extension)

    Wrench is a R library that is included as extension in the following software installations:

  • WRF (more details)
    https://www.wrf-model.org, https://www.mmm.ucar.edu/models/wrf

    The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • writexl (extension)

    writexl is a R library that is included as extension in the following software installations:

  • WriteXLS (extension)

    WriteXLS is a R library that is included as extension in the following software installations:

  • WSClean (more details)
    https://wsclean.readthedocs.io

    WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • WWW::RobotRules (extension)

    WWW::RobotRules is a Perl module that is included as extension in the following software installations:

  • wxPython (more details)
    https://www.wxpython.org

    Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • wxWidgets (more details)
    https://www.wxwidgets.org

    wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • X11 (more details)
    https://www.x.org

    The X Window System (X11) is a windowing system for bitmap displays

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • x264 (more details)
    https://www.videolan.org/developers/x264.html

    x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • x265 (more details)
    https://x265.org

    x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xarray (extension)

    xarray is a Python package that is included as extension in the following software installations:

  • xarray (more details)
    https://github.com/pydata/xarray

    xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xarray-datatree (extension)

    xarray-datatree is a Python package that is included as extension in the following software installations:

  • xarray-einstats (extension)

    xarray-einstats is a Python package that is included as extension in the following software installations:

  • xauth (extension)

    xauth is a that is included as extension in the following software installations:

  • xbitmaps (extension)

    xbitmaps is a that is included as extension in the following software installations:

  • XBRL (extension)

    XBRL is a R library that is included as extension in the following software installations:

  • xcb-proto (extension)

    xcb-proto is a that is included as extension in the following software installations:

  • xcb-util (extension)

    xcb-util is a that is included as extension in the following software installations:

  • xcb-util-cursor (extension)

    xcb-util-cursor is a that is included as extension in the following software installations:

  • xcb-util-image (extension)

    xcb-util-image is a that is included as extension in the following software installations:

  • xcb-util-keysyms (extension)

    xcb-util-keysyms is a that is included as extension in the following software installations:

  • xcb-util-renderutil (extension)

    xcb-util-renderutil is a that is included as extension in the following software installations:

  • xcb-util-wm (extension)

    xcb-util-wm is a that is included as extension in the following software installations:

  • xcms (extension)

    xcms is a R library that is included as extension in the following software installations:

  • Xerces-C++ (more details)
    https://xerces.apache.org/xerces-c

    Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xesmf (extension)

    xesmf is a Python package that is included as extension in the following software installations:

  • xESMF (more details)
    https://xesmf.readthedocs.io

    xESMF: Universal Regridder for Geospatial Data

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xfun (extension)

    xfun is a R library that is included as extension in the following software installations:

  • xgboost (extension)

    xgboost is a R library that is included as extension in the following software installations:

  • xkbcomp (extension)

    xkbcomp is a that is included as extension in the following software installations:

  • xkeyboard-config (extension)

    xkeyboard-config is a that is included as extension in the following software installations:

  • xlrd (extension)

    xlrd is a Python package that is included as extension in the following software installations:

  • xlsx (extension)

    xlsx is a R library that is included as extension in the following software installations:

  • xlsxjars (extension)

    xlsxjars is a R library that is included as extension in the following software installations:

  • XML (extension)

    XML is a R library that is included as extension in the following software installations:

  • XML-LibXML (more details)
    https://metacpan.org/pod/distribution/XML-LibXML/LibXML.pod

    Perl binding for libxml2

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xml2 (extension)

    xml2 is a R library that is included as extension in the following software installations:

  • XML::Bare (extension)

    XML::Bare is a Perl module that is included as extension in the following software installations:

  • XML::DOM (extension)

    XML::DOM is a Perl module that is included as extension in the following software installations:

  • XML::Filter::BufferText (extension)

    XML::Filter::BufferText is a Perl module that is included as extension in the following software installations:

  • XML::LibXML (extension)

    XML::LibXML is a Perl module that is included as extension in the following software installations:

  • XML::NamespaceSupport (extension)

    XML::NamespaceSupport is a Perl module that is included as extension in the following software installations:

  • XML::Parser (extension)

    XML::Parser is a Perl module that is included as extension in the following software installations:

  • XML::RegExp (extension)

    XML::RegExp is a Perl module that is included as extension in the following software installations:

  • XML::SAX (extension)

    XML::SAX is a Perl module that is included as extension in the following software installations:

  • XML::SAX::Base (extension)

    XML::SAX::Base is a Perl module that is included as extension in the following software installations:

  • XML::SAX::Expat (extension)

    XML::SAX::Expat is a Perl module that is included as extension in the following software installations:

  • XML::SAX::Writer (extension)

    XML::SAX::Writer is a Perl module that is included as extension in the following software installations:

  • XML::Simple (extension)

    XML::Simple is a Perl module that is included as extension in the following software installations:

  • XML::Tiny (extension)

    XML::Tiny is a Perl module that is included as extension in the following software installations:

  • XML::Twig (extension)

    XML::Twig is a Perl module that is included as extension in the following software installations:

  • XML::Writer (extension)

    XML::Writer is a Perl module that is included as extension in the following software installations:

  • XML::XPath (extension)

    XML::XPath is a Perl module that is included as extension in the following software installations:

  • xmlf90 (more details)
    https://gitlab.com/siesta-project/libraries/xmlf90

    A fast XML parser and generator in Fortran

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xmlschema (extension)

    xmlschema is a Python package that is included as extension in the following software installations:

  • xmltodict (extension)

    xmltodict is a Python package that is included as extension in the following software installations:

  • xopen (extension)

    xopen is a R library that is included as extension in the following software installations:

  • xopen (extension)

    xopen is a Python package that is included as extension in the following software installations:

  • xorg-macros (more details)
    https://gitlab.freedesktop.org/xorg/util/macros, https://cgit.freedesktop.org/xorg/util/macros

    X.org macros utilities.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xorgproto (extension)

    xorgproto is a that is included as extension in the following software installations:

  • xprop (more details)
    https://www.x.org/wiki

    The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xradar (extension)

    xradar is a Python package that is included as extension in the following software installations:

  • XSLoader (extension)

    XSLoader is a Perl module that is included as extension in the following software installations:

  • xtable (extension)

    xtable is a R library that is included as extension in the following software installations:

  • xterm (more details)
    https://xterm.dev

    X11 terminal emulator for the X Window System

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xtrans (extension)

    xtrans is a that is included as extension in the following software installations:

  • xts (extension)

    xts is a R library that is included as extension in the following software installations:

  • XVector (extension)

    XVector is a R library that is included as extension in the following software installations:

  • Xvfb (extension)

    Xvfb is a that is included as extension in the following software installations:

  • Xvfb (more details)
    https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml

    Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • Xwayland (more details)
    https://www.x.org/releases/X11R7.6/doc/man/man1/Xorg.1.xhtml

    Xorg is a full featured X server that was originally designed for UNIX and UNIX-like operating systems

    Available in EESSI versions: 2025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xxd (more details)
    https://www.vim.org

    xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xxhash (extension)

    xxhash is a Python package that is included as extension in the following software installations:

  • xxHash (more details)
    https://cyan4973.github.io/xxHash

    xxHash is an extremely fast non-cryptographic hash algorithm, working at RAM speed limit.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • xyzservices (extension)

    xyzservices is a Python package that is included as extension in the following software installations:

  • yacrd (more details)
    https://github.com/natir/yacrd

    Yet Another Chimeric Read Detector.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • yaImpute (extension)

    yaImpute is a R library that is included as extension in the following software installations:

  • YAML (extension)

    YAML is a Perl module that is included as extension in the following software installations:

  • yaml (extension)

    yaml is a R library that is included as extension in the following software installations:

  • yaml-cpp (more details)
    https://github.com/jbeder/yaml-cpp

    yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • YAML::Tiny (extension)

    YAML::Tiny is a Perl module that is included as extension in the following software installations:

  • yarl (extension)

    yarl is a Python package that is included as extension in the following software installations:

  • Yasm (more details)
    https://www.tortall.net/projects/yasm

    Yasm: Complete rewrite of the NASM assembler with BSD license

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntel
    Supported GPU families: (none)

  • yell (more details)
    https://github.com/rudionrails/yell

    Yell - Your Extensible Logging Library is a comprehensive logging replacement for Ruby.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • yelp-tools (more details)
    https://gitlab.gnome.org/GNOME/yelp-tools

    yelp-tools is a collection of scripts and build utilities to help create, manage, and publish documentation for Yelp and the web. Most of the heavy lifting is done by packages like yelp-xsl and itstool. This package just wraps things up in a developer-friendly way.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • yelp-xsl (more details)
    https://gitlab.gnome.org/GNOME/yelp-xslg

    yelp-xsl is a collection of programs and data files to help you build, maintain, and distribute documentation. It provides XSLT stylesheets that can be built upon for help viewers and publishing systems. These stylesheets output JavaScript and CSS content, and reference images provided by yelp-xsl. This package also redistributes copies of the jQuery and jQuery.Syntax JavaScript libraries.

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • YODA (more details)
    https://yoda.hepforge.org

    Yet more Objects for (High Energy Physics) Data Analysis

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • yte (extension)

    yte is a Python package that is included as extension in the following software installations:

  • yulab.utils (extension)

    yulab.utils is a R library that is included as extension in the following software installations:

  • Z3 (more details)
    https://github.com/Z3Prover/z3

    Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • z3-solver (extension)

    z3-solver is a Python package that is included as extension in the following software installations:

  • z3_solver (extension)

    z3_solver is a Python package that is included as extension in the following software installations:

  • zCompositions (extension)

    zCompositions is a R library that is included as extension in the following software installations:

  • zeallot (extension)

    zeallot is a R library that is included as extension in the following software installations:

  • zeitwerk (extension)

    zeitwerk is a that is included as extension in the following software installations:

  • zellkonverter (extension)

    zellkonverter is a R library that is included as extension in the following software installations:

  • ZeroMQ (more details)
    https://www.zeromq.org

    ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • zict (extension)

    zict is a Python package that is included as extension in the following software installations:

  • zip (extension)

    zip is a R library that is included as extension in the following software installations:

  • Zip (more details)
    http://www.info-zip.org/Zip.html

    Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • zipfile36 (extension)

    zipfile36 is a Python package that is included as extension in the following software installations:

  • zipp (extension)

    zipp is a Python package that is included as extension in the following software installations:

  • zipstream-new (extension)

    zipstream-new is a Python package that is included as extension in the following software installations:

  • zlibbioc (extension)

    zlibbioc is a R library that is included as extension in the following software installations:

  • Zoltan (more details)
    https://sandialabs.github.io/Zoltan

    Zoltan Dynamic Load Balancing and Graph Algorithm Toolkit

    Available in EESSI versions: 2023.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

  • zoo (extension)

    zoo is a R library that is included as extension in the following software installations:

  • zstandard (extension)

    zstandard is a Python package that is included as extension in the following software installations:

  • zstd (more details)
    https://facebook.github.io/zstd

    Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.

    Available in EESSI versions: 2023.062025.06
    Supported CPU families: AMDIntelArm
    Supported GPU families: (none)

Last update: 2026-02-24T18:04:59.879816Z